RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 DDR2Q16832 855 aa8.62□□□□□ -1.03
SKP1-213ENST00000524288 CDKAL1Q5VV42 579 aa8.62□□□□□ -1.03
SKP1-213ENST00000524288 ZNF662Q6ZS27 426 aa8.62□□□□□ -1.03
SKP1-213ENST00000524288 ZSWIM9Q86XI8 627 aa8.62□□□□□ -1.03
SKP1-213ENST00000524288 RBBP8NLQ8NC74 664 aaPredicted RBP8.62□□□□□ -1.03
SKP1-213ENST00000524288 RIN3Q8TB24 985 aa8.62□□□□□ -1.03
SKP1-213ENST00000524288 PRDM7Q9NQW5 492 aa8.62□□□□□ -1.03
SKP1-213ENST00000524288 CTNND2Q9UQB3 1225 aa8.62□□□□□ -1.03
SKP1-213ENST00000524288 CNTNAP4Q9C0A0 1308 aa8.61□□□□□ -1.03
SKP1-213ENST00000524288 XAGE3Q8WTP9 111 aa8.61□□□□□ -1.03
SKP1-213ENST00000524288 CARS2Q9HA77 564 aaKnown RBP8.61□□□□□ -1.03
SKP1-213ENST00000524288 ATP13A1Q9HD20 1204 aa8.61□□□□□ -1.03
SKP1-213ENST00000524288 FAM53CQ9NYF3 392 aa8.61□□□□□ -1.03
SKP1-213ENST00000524288 A0A1W2PQH9 124 aa8.6□□□□□ -1.03
SKP1-213ENST00000524288 H3BS24 57 aa8.6□□□□□ -1.03
SKP1-213ENST00000524288 DDAH1O94760 285 aa8.6□□□□□ -1.03
SKP1-213ENST00000524288 FARP2O94887 1054 aaPredicted RBP8.6□□□□□ -1.03
SKP1-213ENST00000524288 AFMP43652 599 aa8.6□□□□□ -1.03
SKP1-213ENST00000524288 ZYXQ15942 572 aaKnown RBP8.6□□□□□ -1.03
SKP1-213ENST00000524288 TTC6Q86TZ1 520 aa8.6□□□□□ -1.03
SKP1-213ENST00000524288 MKL1Q969V6 931 aa8.6□□□□□ -1.03
SKP1-213ENST00000524288 ACSF2Q96CM8 615 aaPredicted RBP8.6□□□□□ -1.03
SKP1-213ENST00000524288 PRR36Q9H6K5 1346 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 UPK3BL1B0FP48 263 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 CHURC1-FNTBB4DL54 471 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 UPK3BL2E5RIL1 263 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 GJB6O95452 261 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 CBX7O95931 251 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 GUCY2CP25092 1073 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 YARSP54577 528 aaKnown RBP8.59□□□□□ -1.03
SKP1-213ENST00000524288 TNK2Q07912 1038 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 ARSHQ5FYA8 562 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 TMEM201Q5SNT2 666 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 C6orf15Q6UXA7 325 aaPredicted RBP8.59□□□□□ -1.03
SKP1-213ENST00000524288 TMPRSS7Q7RTY8 843 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 CDH24Q86UP0 819 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 ATG4CQ96DT6 458 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 DPH2Q9BQC3 489 aaPredicted RBP8.59□□□□□ -1.03
SKP1-213ENST00000524288 GMIPQ9P107 970 aa8.59□□□□□ -1.03
SKP1-213ENST00000524288 SLC22A31A6NKX4 558 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 MEIS3P2A8K0S8 358 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 ACRP10323 421 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 POLR2BP30876 1174 aaKnown RBP8.58□□□□□ -1.04
SKP1-213ENST00000524288 GDNFP39905 211 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 MLECQ14165 292 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 TCEAL1Q15170 157 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 KCNMB1Q16558 191 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 FXNQ16595 210 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 DNAJB8Q8NHS0 232 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 CYB5D2Q8WUJ1 264 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 KRTAP9-9Q9BYP9 154 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 KRTAP9-4Q9BYQ2 154 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 KANSL2Q9H9L4 492 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 PCDHB10Q9UN67 800 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 CEP131Q9UPN4 1083 aa8.58□□□□□ -1.04
SKP1-213ENST00000524288 CASP7P55210 303 aa8.57□□□□□ -1.04
SKP1-213ENST00000524288 FZD5Q13467 585 aa8.57□□□□□ -1.04
SKP1-213ENST00000524288 LRRFIP1Q32MZ4 808 aaKnown RBP8.57□□□□□ -1.04
SKP1-213ENST00000524288 NLRC3Q7RTR2 1065 aa8.57□□□□□ -1.04
SKP1-213ENST00000524288 UBE2FQ969M7 185 aa8.57□□□□□ -1.04
SKP1-213ENST00000524288 DNAJC7Q99615 494 aa8.57□□□□□ -1.04
SKP1-213ENST00000524288 TM9SF2Q99805 663 aa8.57□□□□□ -1.04
SKP1-213ENST00000524288 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.57□□□□□ -1.04
SKP1-213ENST00000524288 MSRB2Q9Y3D2 182 aa8.57□□□□□ -1.04
SKP1-213ENST00000524288 ANKRD62A6NC57 917 aa8.56□□□□□ -1.04
SKP1-213ENST00000524288 NME1P15531 152 aaKnown RBP8.56□□□□□ -1.04
SKP1-213ENST00000524288 UNC5AQ6ZN44 842 aa8.56□□□□□ -1.04
SKP1-213ENST00000524288 SLFN12Q8IYM2 578 aa8.56□□□□□ -1.04
SKP1-213ENST00000524288 FAM13CQ8NE31 585 aa8.56□□□□□ -1.04
SKP1-213ENST00000524288 BHLHE22Q8NFJ8 381 aaPredicted RBP8.56□□□□□ -1.04
SKP1-213ENST00000524288 RNPC3Q96LT9 517 aaKnown RBP8.56□□□□□ -1.04
SKP1-213ENST00000524288 PUS7Q96PZ0 661 aaKnown RBP8.56□□□□□ -1.04
SKP1-213ENST00000524288 ALPK1Q96QP1 1244 aa8.56□□□□□ -1.04
SKP1-213ENST00000524288 SLC9A7Q96T83 725 aa8.56□□□□□ -1.04
SKP1-213ENST00000524288 TRIT1Q9H3H1 467 aaKnown RBP8.56□□□□□ -1.04
SKP1-213ENST00000524288 FAM86C1Q9NVL1 165 aa8.56□□□□□ -1.04
SKP1-213ENST00000524288 LTBP3Q9NS15 1303 aa8.55□□□□□ -1.04
SKP1-213ENST00000524288 PDPK1O15530 556 aa8.55□□□□□ -1.04
SKP1-213ENST00000524288 CANXP27824 592 aaKnown RBP8.55□□□□□ -1.04
SKP1-213ENST00000524288 IFRD2Q12894 506 aaPredicted RBP8.55□□□□□ -1.04
SKP1-213ENST00000524288 ZNF648Q5T619 568 aaPredicted RBP8.55□□□□□ -1.04
SKP1-213ENST00000524288 MRM1Q6IN84 353 aaKnown RBP8.55□□□□□ -1.04
SKP1-213ENST00000524288 FAM178BQ8IXR5 827 aa8.55□□□□□ -1.04
SKP1-213ENST00000524288 C19orf47Q8N9M1 422 aaKnown RBP8.55□□□□□ -1.04
SKP1-213ENST00000524288 ZSWIM5Q9P217 1185 aa8.55□□□□□ -1.04
SKP1-213ENST00000524288 PFDN2Q9UHV9 154 aa8.55□□□□□ -1.04
SKP1-213ENST00000524288 RAG1P15918 1043 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 JAG1P78504 1218 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 PKN1Q16512 942 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 KSR1Q8IVT5 923 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 LILRB2Q8N423 598 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 SH3TC2Q8TF17 1288 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 PPP1R13LQ8WUF5 828 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 KIRREL1Q96J84 757 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 SLC38A3Q99624 504 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 CCDC113Q9H0I3 377 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 CNNM2Q9H8M5 875 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 C19orf73Q9NVV2 129 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 KCNH3Q9ULD8 1083 aa8.54□□□□□ -1.04
SKP1-213ENST00000524288 ZNF503-AS2A6NEH8 195 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms