RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 USP17L1Q7RTZ2 530 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 IFIH1Q9BYX4 1025 aaKnown RBP13.03□□□□□ -0.32
SYNPO-204ENST00000519664 USP21Q9UK80 565 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 MAN1B1Q9UKM7 699 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 RPN1P04843 607 aaKnown RBP13.03□□□□□ -0.32
SYNPO-204ENST00000519664 GBP2P32456 591 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-204ENST00000519664 DPH6Q7L8W6 267 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 HDAC9Q9UKV0 1011 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 NMT2O60551 498 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 PPP6R2O75170 966 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 PRDX5P30044 214 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 FOXO4P98177 505 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 USP17L2Q6R6M4 530 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 ATG9AQ7Z3C6 839 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 OXER1Q8TDS5 423 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 PAIP2Q9BPZ3 127 aaKnown RBP13.03□□□□□ -0.32
SYNPO-204ENST00000519664 RNF26Q9BY78 433 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-204ENST00000519664 FOXP1Q9H334 677 aaPredicted RBP13.03□□□□□ -0.32
SYNPO-204ENST00000519664 NEDD4P46934 1319 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 ARAP3Q8WWN8 1544 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 CYP2D6P10635 497 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 PLCB3Q01970 1234 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 CYP4A11Q02928 519 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 C8orf74Q6P047 294 aa13.03□□□□□ -0.32
SYNPO-204ENST00000519664 MYO3AQ8NEV4 1616 aa13.02□□□□□ -0.32
SYNPO-204ENST00000519664 ZMYND10O75800 440 aa13.02□□□□□ -0.32
SYNPO-204ENST00000519664 CCDC172P0C7W6 258 aa13.02□□□□□ -0.32
SYNPO-204ENST00000519664 EEF2P13639 858 aaKnown RBP13.02□□□□□ -0.32
SYNPO-204ENST00000519664 RPL13P26373 211 aaKnown RBP13.02□□□□□ -0.32
SYNPO-204ENST00000519664 TRIM14Q14142 442 aa13.02□□□□□ -0.32
SYNPO-204ENST00000519664 PCDHA12Q9UN75 941 aa13.02□□□□□ -0.32
SYNPO-204ENST00000519664 BACH1O14867 736 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 CACNB1Q02641 598 aaPredicted RBP13.02□□□□□ -0.33
SYNPO-204ENST00000519664 RBL2Q08999 1139 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 KLHL30Q0D2K2 578 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 SMC1AQ14683 1233 aaKnown RBP13.02□□□□□ -0.33
SYNPO-204ENST00000519664 LRRC41Q15345 812 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 USP27XA6NNY8 438 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 FOXN1O15353 648 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 BUB1O43683 1085 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 SLC16A2P36021 539 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 SLC9C1Q4G0N8 1177 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 SND1Q7KZF4 910 aaKnown RBP eCLIP13.02□□□□□ -0.33
SYNPO-204ENST00000519664 SPATA31A3Q5VYP0 1347 aa13.02□□□□□ -0.33
SYNPO-204ENST00000519664 SOWAHDA6NJG2 315 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 TMEM232C9JQI7 657 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 CEP104O60308 925 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 GCNT3O95395 438 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 PRR16Q569H4 304 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 FAM196AQ6ZSG2 479 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 SAR1BQ9Y6B6 198 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 EPN1Q9Y6I3 576 aaPredicted RBP13.01□□□□□ -0.33
SYNPO-204ENST00000519664 CCDC169A6NNP5 214 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 OPA1O60313 960 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 OR52Z1P0C646 297 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 NEK8Q86SG6 692 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 HOOK3Q86VS8 718 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 TPH2Q8IWU9 490 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 SPICE1Q8N0Z3 855 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 MICALL1Q8N3F8 863 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 B4DLN1 442 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 SLC35F6Q8N357 371 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 ACRBPQ8NEB7 543 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 DNM3Q9UQ16 869 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 IQSEC2Q5JU85 1478 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 GCOM1H8Y6P7 765 aaPredicted RBP13.01□□□□□ -0.33
SYNPO-204ENST00000519664 GTPBP6O43824 516 aaPredicted RBP13.01□□□□□ -0.33
SYNPO-204ENST00000519664 STX10O60499 249 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 MYZAPP0CAP1 466 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 LIFRP42702 1097 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 MYCT1Q8N699 235 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 UBLCP1Q8WVY7 318 aaPredicted RBP13.01□□□□□ -0.33
SYNPO-204ENST00000519664 COA7Q96BR5 231 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 PSTPIP2Q9H939 334 aa13.01□□□□□ -0.33
SYNPO-204ENST00000519664 USP31Q70CQ4 1352 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 RPAP1Q9BWH6 1393 aaPredicted RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 EBAG9O00559 213 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 SLFN14P0C7P3 912 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 COPB1P53618 953 aaKnown RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 MECOMQ03112 1051 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 ARHGAP44Q17R89 818 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 GRIPAP1Q4V328 841 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 FMR1NBQ8N0W7 255 aaPredicted RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 MRPL44Q9H9J2 332 aaKnown RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 ATP8A2Q9NTI2 1148 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 KIF28PB7ZC32 967 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 EPB41P11171 864 aaKnown RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 MYCLP12524 364 aaPredicted RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 PRKG1Q13976 671 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 NBPF11Q86T75 865 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 CCDC84Q86UT8 332 aaPredicted RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 SLC44A5Q8NCS7 719 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 FAM76AQ8TAV0 307 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 MYCBPQ99417 103 aaPredicted RBP13□□□□□ -0.33
SYNPO-204ENST00000519664 SETBP1Q9Y6X0 1596 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 NSMFQ6X4W1 530 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 CCDC50Q8IVM0 306 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 TRIML1Q8N9V2 468 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 NOX5Q96PH1 765 aa13□□□□□ -0.33
SYNPO-204ENST00000519664 GSDMAQ96QA5 445 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms