RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 KCNA1Q09470 495 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 PRRT2Q7Z6L0 340 aaPredicted RBP5.58□□□□□ -1.52
CSMD3-209ENST00000519485 PANK1Q8TE04 598 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 MAP6Q96JE9 813 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 CCDC74BQ96LY2 380 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 TEPSINQ96N21 525 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 HDAC8Q9BY41 377 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 CNTD2Q9H8S5 307 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 LUC7LQ9NQ29 371 aaKnown RBP5.58□□□□□ -1.52
CSMD3-209ENST00000519485 SIRT5Q9NXA8 310 aa5.58□□□□□ -1.52
CSMD3-209ENST00000519485 ADRB1P08588 477 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 PDIA4P13667 645 aaKnown RBP5.57□□□□□ -1.52
CSMD3-209ENST00000519485 VIPR1P32241 457 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 ERVFRD-1P60508 538 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 CAP1Q01518 475 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 MAP3K11Q16584 847 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 CLEC16AQ2KHT3 1053 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 AEBP1Q8IUX7 1158 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 USHBP1Q8N6Y0 703 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 DAGLBQ8NCG7 672 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 PHC3Q8NDX5 983 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 TRAIPQ9BWF2 469 aa5.57□□□□□ -1.52
CSMD3-209ENST00000519485 ZC3H12DA2A288 527 aaKnown RBP5.56□□□□□ -1.52
CSMD3-209ENST00000519485 PATL2C9JE40 543 aaKnown RBP5.56□□□□□ -1.52
CSMD3-209ENST00000519485 TNNI2P48788 182 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 GALK1P51570 392 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 EPHB3P54753 998 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 EFEMP1Q12805 493 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 NMIQ13287 307 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-209ENST00000519485 GGNQ86UU5 652 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 ZNF655Q8N720 491 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-209ENST00000519485 LINC00116Q8NCU8 138 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 GATAD2BQ8WXI9 593 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 JARID2Q92833 1246 aaPredicted RBP5.56□□□□□ -1.52
CSMD3-209ENST00000519485 TLR6Q9Y2C9 796 aa5.56□□□□□ -1.52
CSMD3-209ENST00000519485 TMEM82A0PJX8 343 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 USP2O75604 605 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-209ENST00000519485 BPNT1O95861 308 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 LMNB2Q03252 620 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 FRMD5Q7Z6J6 570 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 FAM129CQ86XR2 697 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 TMEFF1Q8IYR6 380 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 MZB1Q8WU39 189 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 HHIPL1Q96JK4 782 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 ASCC2Q9H1I8 757 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-209ENST00000519485 REV1Q9UBZ9 1251 aa5.55□□□□□ -1.52
CSMD3-209ENST00000519485 CDR1P51861 262 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 RNF4P78317 190 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 TAF1CQ15572 869 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-209ENST00000519485 SLC14A2Q15849 920 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 MEI1Q5TIA1 1274 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 WAPLQ7Z5K2 1190 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 SIRT2Q8IXJ6 389 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 LINC01356Q8N9X3 169 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 FEZF2Q8TBJ5 459 aa5.54□□□□□ -1.52
CSMD3-209ENST00000519485 CNOT11Q9UKZ1 510 aaKnown RBP5.54□□□□□ -1.52
CSMD3-209ENST00000519485 CHURC1-FNTBB4DL54 471 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 HTR3BO95264 441 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 RPL10P27635 214 aaKnown RBP5.53□□□□□ -1.52
CSMD3-209ENST00000519485 PCBP3P57721 371 aaKnown RBP5.53□□□□□ -1.52
CSMD3-209ENST00000519485 TMEM62Q0P6H9 643 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 SPATS1Q496A3 300 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 CNKSR3Q6P9H4 555 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 BNC2Q6ZN30 1099 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-209ENST00000519485 CEP128Q6ZU80 1094 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 IGDCC3Q8IVU1 814 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 TCTN2Q96GX1 697 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 TNFRSF10DQ9UBN6 386 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 ZMYM5Q9UJ78 669 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 TCFL5Q9UL49 500 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 USP31Q70CQ4 1352 aa5.53□□□□□ -1.52
CSMD3-209ENST00000519485 RGS13O14921 159 aa5.52□□□□□ -1.53
CSMD3-209ENST00000519485 ENDOUP21128 410 aaKnown RBP5.52□□□□□ -1.53
CSMD3-209ENST00000519485 CAMK2GQ13555 558 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-209ENST00000519485 BBS9Q3SYG4 887 aa5.52□□□□□ -1.53
CSMD3-209ENST00000519485 RHOVQ96L33 236 aa5.52□□□□□ -1.53
CSMD3-209ENST00000519485 FCRL2Q96LA5 508 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-209ENST00000519485 DUSP9Q99956 384 aaKnown RBP5.52□□□□□ -1.53
CSMD3-209ENST00000519485 FOXP3Q9BZS1 431 aa5.52□□□□□ -1.53
CSMD3-209ENST00000519485 POLR3KQ9Y2Y1 108 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-209ENST00000519485 FADS2P1A8MWK0 482 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 DNAJA2O60884 412 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 F13A1P00488 732 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 MPOP05164 745 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 RTP1P59025 263 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 LAPTM5Q13571 262 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 CBX2Q14781 532 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-209ENST00000519485 NBPF9Q3BBW0 867 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 GALNT18Q6P9A2 607 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 LDHDQ86WU2 507 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 PHACTR4Q8IZ21 702 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 KIF2CQ99661 725 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 PLCD4Q9BRC7 762 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 KLHL14Q9P2G3 628 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 PCDHA5Q9Y5H7 936 aa5.51□□□□□ -1.53
CSMD3-209ENST00000519485 WTIPA6NIX2 430 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-209ENST00000519485 ARL4AP40617 200 aa5.5□□□□□ -1.53
CSMD3-209ENST00000519485 MPP2Q14168 576 aa5.5□□□□□ -1.53
CSMD3-209ENST00000519485 ZXDCQ2QGD7 858 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-209ENST00000519485 ZFYVE27Q5T4F4 411 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms