RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 WDR90Q96KV7 1748 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 DLC1Q96QB1 1528 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 MYOM3Q5VTT5 1437 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 TMEM265A0A087WTH1 108 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 PAGE1O75459 146 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 TRIM37O94972 964 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 CEACAM5P06731 702 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 ZNF252P-AS1Q0IIN9 211 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 IDI1Q13907 227 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 C12orf40Q86WS4 652 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 HEXIM2Q96MH2 286 aaKnown RBP7.64□□□□□ -1.19
NUP54-218ENST00000515460 FRMD6Q96NE9 622 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 SETDB2Q96T68 719 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 C19orf44Q9H6X5 657 aa7.64□□□□□ -1.19
NUP54-218ENST00000515460 MROH1Q8NDA8 1641 aa7.63□□□□□ -1.19
NUP54-218ENST00000515460 ABCC5O15440 1437 aa7.63□□□□□ -1.19
NUP54-218ENST00000515460 ARHGAP31Q2M1Z3 1444 aa7.63□□□□□ -1.19
NUP54-218ENST00000515460 ENC1O14682 589 aa7.63□□□□□ -1.19
NUP54-218ENST00000515460 BMP6P22004 513 aa7.63□□□□□ -1.19
NUP54-218ENST00000515460 ZNF648Q5T619 568 aaPredicted RBP7.63□□□□□ -1.19
NUP54-218ENST00000515460 SND1Q7KZF4 910 aaKnown RBP eCLIP7.63□□□□□ -1.19
NUP54-218ENST00000515460 MKNK2Q9HBH9 465 aa7.63□□□□□ -1.19
NUP54-218ENST00000515460 SLIT1O75093 1534 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 KIF15Q9NS87 1388 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 LDHBP07195 334 aaKnown RBP7.62□□□□□ -1.19
NUP54-218ENST00000515460 P4HBP07237 508 aaKnown RBP7.62□□□□□ -1.19
NUP54-218ENST00000515460 UBE3DQ7Z6J8 389 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 ATG4DQ86TL0 474 aaPredicted RBP7.62□□□□□ -1.19
NUP54-218ENST00000515460 LRRN4CLQ8ND94 238 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 OSBPL7Q9BZF2 842 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 C12orf49Q9H741 205 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 PRDM10Q9NQV6 1147 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 PRDM7Q9NQW5 492 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 FAM8A1Q9UBU6 413 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 PCDHA4Q9UN74 947 aa7.62□□□□□ -1.19
NUP54-218ENST00000515460 CCDC9Q9Y3X0 531 aaKnown RBP7.62□□□□□ -1.19
NUP54-218ENST00000515460 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.62□□□□□ -1.19
NUP54-218ENST00000515460 TET3O43151 1660 aa7.61□□□□□ -1.19
NUP54-218ENST00000515460 USP19O94966 1318 aa7.61□□□□□ -1.19
NUP54-218ENST00000515460 ANGEL2Q5VTE6 544 aaKnown RBP7.61□□□□□ -1.19
NUP54-218ENST00000515460 CDC37L1Q7L3B6 337 aa7.61□□□□□ -1.19
NUP54-218ENST00000515460 FAM168AQ92567 244 aa7.61□□□□□ -1.19
NUP54-218ENST00000515460 RREB1Q92766 1687 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 TMEM2Q9UHN6 1383 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 RASIP1Q5U651 963 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 LLGL2Q6P1M3 1020 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 FAM214BQ7L5A3 538 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 ANKRD24Q8TF21 1146 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 GTF2IRD1Q9UHL9 959 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 DUOX2Q9NRD8 1548 aa7.6□□□□□ -1.19
NUP54-218ENST00000515460 CFAP65Q6ZU64 1925 aaKnown RBP7.59□□□□□ -1.19
NUP54-218ENST00000515460 PRPF40AO75400 957 aaKnown RBP7.59□□□□□ -1.19
NUP54-218ENST00000515460 NTF4P34130 210 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 JAG1P78504 1218 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 IKZF1Q13422 519 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 LRRC14Q15048 493 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 ZNF124Q15973 351 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 ABHD8Q96I13 439 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 PCGF6Q9BYE7 350 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 CACNA2D2Q9NY47 1150 aa7.59□□□□□ -1.19
NUP54-218ENST00000515460 ARID1BQ8NFD5 2236 aaPredicted RBP7.59□□□□□ -1.19
NUP54-218ENST00000515460 CASZ1Q86V15 1759 aa7.59□□□□□ -1.2
NUP54-218ENST00000515460 USP17L7P0C7H9 530 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 EIF4BP23588 611 aaKnown RBP7.58□□□□□ -1.2
NUP54-218ENST00000515460 GNA15P30679 374 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 RGS19P49795 217 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 EAPPQ56P03 285 aaPredicted RBP7.58□□□□□ -1.2
NUP54-218ENST00000515460 ZBTB37Q5TC79 503 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 HOMEZQ8IX15 550 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 ASB11Q8WXH4 323 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 ELMO3Q96BJ8 720 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 TNKS2Q9H2K2 1166 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 DAPK1P53355 1430 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 ERBINQ96RT1 1412 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.58□□□□□ -1.2
NUP54-218ENST00000515460 KANK1Q14678 1352 aa7.58□□□□□ -1.2
NUP54-218ENST00000515460 ANKRD33BA6NCL7 494 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 CCDC85CA6NKD9 419 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 FANCGO15287 622 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 ZP2Q05996 745 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 SCARA3Q6AZY7 606 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 SLC23A3Q6PIS1 610 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 SLC52A1Q9NWF4 448 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 SNX11Q9Y5W9 270 aa7.57□□□□□ -1.2
NUP54-218ENST00000515460 CUL9Q8IWT3 2517 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 EIF2AK4Q9P2K8 1649 aaKnown RBP7.56□□□□□ -1.2
NUP54-218ENST00000515460 NOS1P29475 1434 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 MST1RQ04912 1400 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 PRAMEF27A3QJZ7 478 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 GNAT3A8MTJ3 354 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 IGF2BP3O00425 579 aaKnown RBP eCLIP7.56□□□□□ -1.2
NUP54-218ENST00000515460 CELA3AP09093 270 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 RING1Q06587 406 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 INPP5AQ14642 412 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 VPS72Q15906 364 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 NKPD1Q17RQ9 610 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 PCNX4Q63HM2 1172 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 SPACA3Q8IXA5 215 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 CYP8B1Q9UNU6 501 aa7.56□□□□□ -1.2
NUP54-218ENST00000515460 TTF2Q9UNY4 1162 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms