RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 NOGQ13253 232 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 DGKZQ13574 1117 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 CCL15Q16663 113 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 FANCBQ8NB91 859 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 CTCFLQ8NI51 663 aaPredicted RBP24.48■■□□□ 1.51
LSM6-207ENST00000515311 NUP133Q8WUM0 1156 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 SNX21Q969T3 373 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 CAPNS2Q96L46 248 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 ZSCAN31Q96LW9 406 aaPredicted RBP24.48■■□□□ 1.51
LSM6-207ENST00000515311 LARP6Q9BRS8 491 aaKnown RBP24.48■■□□□ 1.51
LSM6-207ENST00000515311 NAP1L2Q9ULW6 460 aaPredicted RBP24.48■■□□□ 1.51
LSM6-207ENST00000515311 MTMR7Q9Y216 660 aa24.48■■□□□ 1.51
LSM6-207ENST00000515311 THSD7BQ9C0I4 1608 aa24.47■■□□□ 1.51
LSM6-207ENST00000515311 PALM3A6NDB9 673 aaPredicted RBP24.47■■□□□ 1.51
LSM6-207ENST00000515311 METAP2P50579 478 aaKnown RBP eCLIP24.47■■□□□ 1.51
LSM6-207ENST00000515311 INHBEP58166 350 aa24.47■■□□□ 1.51
LSM6-207ENST00000515311 FAM83BQ5T0W9 1011 aa24.47■■□□□ 1.51
LSM6-207ENST00000515311 GADL1Q6ZQY3 521 aa24.47■■□□□ 1.51
LSM6-207ENST00000515311 NOL8Q76FK4 1167 aaKnown RBP24.47■■□□□ 1.51
LSM6-207ENST00000515311 RASGRP2Q7LDG7 609 aa24.47■■□□□ 1.51
LSM6-207ENST00000515311 AGTPBP1Q9UPW5 1226 aa24.47■■□□□ 1.51
LSM6-207ENST00000515311 CCDC196A0A1B0GTZ2 297 aa24.46■■□□□ 1.51
LSM6-207ENST00000515311 GOLGA8AA7E2F4 631 aa24.46■■□□□ 1.51
LSM6-207ENST00000515311 PFKFB2O60825 505 aa24.46■■□□□ 1.51
LSM6-207ENST00000515311 RTN1Q16799 776 aa24.46■■□□□ 1.51
LSM6-207ENST00000515311 CCDC96Q2M329 555 aa24.46■■□□□ 1.51
LSM6-207ENST00000515311 BRI3BPQ8WY22 251 aa24.46■■□□□ 1.51
LSM6-207ENST00000515311 NUP88Q99567 741 aaPredicted RBP24.46■■□□□ 1.51
LSM6-207ENST00000515311 RPAP3Q9H6T3 665 aaPredicted RBP24.46■■□□□ 1.51
LSM6-207ENST00000515311 SH2B1Q9NRF2 756 aaPredicted RBP24.46■■□□□ 1.51
LSM6-207ENST00000515311 RBM28Q9NW13 759 aaKnown RBP24.46■■□□□ 1.51
LSM6-207ENST00000515311 MAD2L2Q9UI95 211 aa24.46■■□□□ 1.51
LSM6-207ENST00000515311 PLA2G6O60733 806 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 RXRAP19793 462 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 HOXA7P31268 230 aaPredicted RBP24.45■■□□□ 1.5
LSM6-207ENST00000515311 SREBF2Q12772 1141 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 PABPC4Q13310 644 aaKnown RBP eCLIP24.45■■□□□ 1.51e-8■■■■■ 73.4
LSM6-207ENST00000515311 ME3Q16798 604 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 TREML2Q5T2D2 321 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 GPAT2Q6NUI2 795 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 RAB11FIP4Q86YS3 637 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 SLKQ9H2G2 1235 aaPredicted RBP24.45■■□□□ 1.5
LSM6-207ENST00000515311 SLC45A1Q9Y2W3 748 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 RLFQ13129 1914 aa24.45■■□□□ 1.5
LSM6-207ENST00000515311 FRMPD2Q68DX3 1309 aaPredicted RBP24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L15C9J2P7 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L13C9JLJ4 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L11C9JVI0 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L18D6R9N7 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L22D6RA61 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L17D6RBQ6 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L19D6RCP7 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L20D6RJB6 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 GNAQP50148 359 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 USP17L24Q0WX57 530 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 KCTD1Q719H9 257 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 ANKRD23Q86SG2 305 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 CCDC144CPQ8IYA2 1237 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 REM2Q8IYK8 340 aaPredicted RBP24.44■■□□□ 1.5
LSM6-207ENST00000515311 LZTS2Q9BRK4 669 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 TANGO6Q9C0B7 1094 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 FEM1BQ9UK73 627 aa24.44■■□□□ 1.5
LSM6-207ENST00000515311 LARGE1O95461 756 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 STAT2P52630 851 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 HTRA3P83110 453 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 BTNL9Q6UXG8 535 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 CATSPERGQ6ZRH7 1159 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 STAG2Q8N3U4 1231 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 GTF3C6Q969F1 213 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 CHMP4CQ96CF2 233 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 ZCCHC17Q9NP64 241 aaKnown RBP24.43■■□□□ 1.5
LSM6-207ENST00000515311 GPCPD1Q9NPB8 672 aa24.43■■□□□ 1.5
LSM6-207ENST00000515311 FAM217BQ9NTX9 383 aaPredicted RBP24.43■■□□□ 1.5
LSM6-207ENST00000515311 WDR33Q9C0J8 1336 aaKnown RBP24.42■■□□□ 1.5
LSM6-207ENST00000515311 KLRF2D3W0D1 207 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 DHX16O60231 1041 aaKnown RBP24.42■■□□□ 1.5
LSM6-207ENST00000515311 GOLGA8HP0CJ92 632 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 SMARCA1P28370 1054 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 STK3Q13188 491 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 GRM1Q13255 1194 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 TMTC3Q6ZXV5 915 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 FAM160B2Q86V87 743 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 CHURC1Q8WUH1 139 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 TMX3Q96JJ7 454 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 TSHZ2Q9NRE2 1034 aa24.42■■□□□ 1.5
LSM6-207ENST00000515311 ISY1Q9ULR0 285 aaKnown RBP24.42■■□□□ 1.5
LSM6-207ENST00000515311 MYPNQ86TC9 1320 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 BTBD19C9JJ37 291 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 TMEM232C9JQI7 657 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 CDC27P30260 824 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 MAP2K2P36507 400 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 TM4SF4P48230 202 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 VEGFBP49765 207 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 CCT2P78371 535 aaKnown RBP24.41■■□□□ 1.5
LSM6-207ENST00000515311 KIF23Q02241 960 aaPredicted RBP24.41■■□□□ 1.5
LSM6-207ENST00000515311 SCRN1Q12765 414 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 PTPN18Q99952 460 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 SLF1Q9BQI6 1058 aa24.41■■□□□ 1.5
LSM6-207ENST00000515311 NCOA5Q9HCD5 579 aaKnown RBP24.41■■□□□ 1.5
LSM6-207ENST00000515311 K7ELQ4 463 aaPredicted RBP24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms