RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 PCDHA4Q9UN74 947 aa17.13■□□□□ 0.33
VCAN-211ENST00000513984 DDTLA6NHG4 134 aaPredicted RBP17.12■□□□□ 0.33
VCAN-211ENST00000513984 M0R2N6 131 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 STXBP3O00186 592 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 TGFB2P61812 414 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 ASPRV1Q53RT3 343 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 NOM1Q5C9Z4 860 aaKnown RBP17.12■□□□□ 0.33
VCAN-211ENST00000513984 TYW1BQ6NUM6 668 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 SH3BP5LQ7L8J4 393 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 ANO10Q9NW15 660 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 USP17L5A8MUK1 530 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 ENTPD3O75355 529 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 VIL1P09327 827 aaKnown RBP17.12■□□□□ 0.33
VCAN-211ENST00000513984 ATP2B1P20020 1258 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 ZNF165P49910 485 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 TCP10Q12799 353 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 TTC38Q5R3I4 469 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 LUZP1Q86V48 1076 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 LARGE2Q8N3Y3 721 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 GMLQ99445 158 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 ZNF277Q9NRM2 450 aaPredicted RBP17.12■□□□□ 0.33
VCAN-211ENST00000513984 KCNH3Q9ULD8 1083 aa17.12■□□□□ 0.33
VCAN-211ENST00000513984 WNT7AO00755 349 aa17.11■□□□□ 0.33
VCAN-211ENST00000513984 ADAMTS3O15072 1205 aa17.11■□□□□ 0.33
VCAN-211ENST00000513984 GRIN1Q05586 938 aa17.11■□□□□ 0.33
VCAN-211ENST00000513984 PIK3AP1Q6ZUJ8 805 aa17.11■□□□□ 0.33
VCAN-211ENST00000513984 HEATR3Q7Z4Q2 680 aa17.11■□□□□ 0.33
VCAN-211ENST00000513984 METTL16Q86W50 562 aaKnown RBP17.11■□□□□ 0.33
VCAN-211ENST00000513984 ELOA2Q8IYF1 753 aaPredicted RBP17.11■□□□□ 0.33
VCAN-211ENST00000513984 LRRC47Q8N1G4 583 aaKnown RBP17.11■□□□□ 0.33
VCAN-211ENST00000513984 RRP36Q96EU6 259 aaKnown RBP17.11■□□□□ 0.33
VCAN-211ENST00000513984 RIOX1Q9H6W3 641 aa17.11■□□□□ 0.33
VCAN-211ENST00000513984 TDRD3Q9H7E2 651 aaKnown RBP17.11■□□□□ 0.33
VCAN-211ENST00000513984 PSMD14O00487 310 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 ADCY5O95622 1261 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 TATDN1Q6P1N9 297 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 C11orf57Q6ZUT1 292 aaPredicted RBP17.1■□□□□ 0.33
VCAN-211ENST00000513984 CLEC10AQ8IUN9 316 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 FOXP4Q8IVH2 680 aaPredicted RBP17.1■□□□□ 0.33
VCAN-211ENST00000513984 FERMT2Q96AC1 680 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 PRMT6Q96LA8 375 aaPredicted RBP17.1■□□□□ 0.33
VCAN-211ENST00000513984 FAM13BQ9NYF5 915 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 PIM2Q9P1W9 311 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 CLIP2Q9UDT6 1046 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 hCG_1984214I3L0E3 225 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 ZBTB7AO95365 584 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 ATP2C1P98194 919 aaPredicted RBP17.1■□□□□ 0.33
VCAN-211ENST00000513984 ZNF713Q8N859 430 aaPredicted RBP17.1■□□□□ 0.33
VCAN-211ENST00000513984 CCDC12Q8WUD4 166 aaPredicted RBP17.1■□□□□ 0.33
VCAN-211ENST00000513984 MTFR1LQ9H019 292 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 ZMYND12Q9H0C1 365 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 CPVLQ9H3G5 476 aa17.1■□□□□ 0.33
VCAN-211ENST00000513984 AP5Z1O43299 807 aa17.09■□□□□ 0.33
VCAN-211ENST00000513984 EIF6P56537 245 aaKnown RBP17.09■□□□□ 0.33
VCAN-211ENST00000513984 IQCB1Q15051 598 aa17.09■□□□□ 0.33
VCAN-211ENST00000513984 KRBA2Q6ZNG9 492 aa17.09■□□□□ 0.33
VCAN-211ENST00000513984 ZSCAN29Q8IWY8 852 aaPredicted RBP17.09■□□□□ 0.33
VCAN-211ENST00000513984 ERCC4Q92889 916 aaPredicted RBP17.09■□□□□ 0.33
VCAN-211ENST00000513984 SEC63Q9UGP8 760 aaKnown RBP17.09■□□□□ 0.33
VCAN-211ENST00000513984 SPDYE2BA6NHP3 402 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 ESPNB1AK53 854 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 MPHOSPH10O00566 681 aaKnown RBP17.08■□□□□ 0.33
VCAN-211ENST00000513984 RAD17O75943 681 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 SPDYE6P0CI01 402 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 SLURP2P0DP57 97 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 POLD1P28340 1107 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 ZNF543Q08ER8 600 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 ZNF174Q15697 407 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 CERKLQ49MI3 558 aaPredicted RBP17.08■□□□□ 0.33
VCAN-211ENST00000513984 CSRNP2Q9H175 543 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 TUBE1Q9UJT0 475 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 HDAC9Q9UKV0 1011 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 PCDHA6Q9UN73 950 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 PCDHA8Q9Y5H6 950 aa17.08■□□□□ 0.33
VCAN-211ENST00000513984 FRMPD2Q68DX3 1309 aaPredicted RBP17.08■□□□□ 0.32
VCAN-211ENST00000513984 ESYT2A0FGR8 921 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 LONRF3Q496Y0 759 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 SPECC1Q5M775 1068 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 NIM1KQ8IY84 436 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 CEP57L1Q8IYX8 460 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 MKL1Q969V6 931 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 PIGSQ96S52 555 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 TRIM34Q9BYJ4 488 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 NYAP2Q9P242 653 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 CCDC39Q9UFE4 941 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 ZNRF3Q9ULT6 936 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.07■□□□□ 0.32
VCAN-211ENST00000513984 FAM196BA6NMK8 535 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 NAPAP54920 295 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 PTGDRQ13258 359 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 GPATCH4Q5T3I0 446 aaKnown RBP17.07■□□□□ 0.32
VCAN-211ENST00000513984 HOMER1Q86YM7 354 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 UBA5Q9GZZ9 404 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 RRAGDQ9NQL2 400 aaPredicted RBP17.07■□□□□ 0.32
VCAN-211ENST00000513984 TMOD2Q9NZR1 351 aa17.07■□□□□ 0.32
VCAN-211ENST00000513984 GOLGB1Q14789 3259 aaKnown RBP17.06■□□□□ 0.32
VCAN-211ENST00000513984 CCDC194A0A1B0GVG4 234 aa17.06■□□□□ 0.32
VCAN-211ENST00000513984 NLRP12P59046 1061 aa17.06■□□□□ 0.32
VCAN-211ENST00000513984 ZRSR1Q15695 479 aaKnown RBP17.06■□□□□ 0.32
VCAN-211ENST00000513984 TMEM179Q6ZVK1 233 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms