RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CTR9Q6PD62 1173 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 GPKOWQ92917 476 aaPredicted RBP eCLIP10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 TNFRSF25Q93038 417 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 HINFPQ9BQA5 517 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 PODXL2Q9NZ53 605 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 EPN1Q9Y6I3 576 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 CAPN2P17655 700 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 ATP6V1AP38606 617 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 RCAN1P53805 252 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 CYP26C1Q6V0L0 522 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 BICDL1Q6ZP65 573 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 HDXQ7Z353 690 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 GDAP1L1Q96MZ0 367 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 TMEM51Q9NW97 253 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 LIMA1Q9UHB6 759 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 L1RE1Q9UN81 338 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 TTC26A0AVF1 554 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 RPN1P04843 607 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 ZNF384Q8TF68 577 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 AK7Q96M32 723 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 GNL3LQ9NVN8 582 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 FAN1Q9Y2M0 1017 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 UBR2Q8IWV8 1755 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 DCCP43146 1447 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 SEMA3EO15041 775 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 GTPBP6O43824 516 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 SRGAP2O75044 1071 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 ERLIN1O75477 346 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 SCG2P13521 617 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 RAD51AP2Q09MP3 1159 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 CT47A1Q5JQC4 288 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 PDXDC2PQ6P474 469 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 CCDC51Q96ER9 411 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 RWDD2AQ9UIY3 292 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 ANAPC4Q9UJX5 808 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 STAT6P42226 847 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 CRKLP46109 303 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 PMS1P54277 932 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 C3orf67Q6ZVT6 689 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 SMIM5Q71RC9 77 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 RBM28Q9NW13 759 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 MYO6Q9UM54 1294 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 TSPY2A6NKD2 308 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 PARP1P09874 1014 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 INTS5Q6P9B9 1019 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 GPIHBP1Q8IV16 184 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 CAPZA3Q96KX2 299 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 CNTNAP5Q8WYK1 1306 aa10.43□□□□□ -0.74
LIMCH1-215ENST00000512632 LRRC10BA6NIK2 292 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 ZMYND10O75800 440 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 SPAG1Q07617 926 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 IRF2BP1Q8IU81 584 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 BBXQ8WY36 941 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 CCDC87Q9NVE4 849 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 TFCP2L1Q9NZI6 479 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 REXO2Q9Y3B8 237 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 NDUFA10O95299 355 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 CAVIN4Q5BKX8 364 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 CCDC24Q8N4L8 307 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 MSANTD4Q8NCY6 345 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 RAB21Q9UL25 225 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 LUC7L2Q9Y383 392 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 BCL9O00512 1426 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 CALM1P0DP23 149 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 CALM2P0DP24 149 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 CALM3P0DP25 149 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 KLRK1P26718 216 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 GTF2E1P29083 439 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 CASP8Q14790 479 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 SKIDA1Q1XH10 827 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 ZNF658Q5TYW1 1059 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 ANKRD18AQ8IVF6 992 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 VGLL3A8MV65 326 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 TSR1Q2NL82 804 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 OR8K1Q8NGG5 319 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 TRIM47Q96LD4 638 aa10.42□□□□□ -0.74
LIMCH1-215ENST00000512632 ITIH6Q6UXX5 1313 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 FAM205AQ6ZU69 1335 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 CAMTA2O94983 1202 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 PIP4K2BP78356 416 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 EXOC4Q96A65 974 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 FAM84BQ96KN1 310 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 PARP4Q9UKK3 1724 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 LRP6O75581 1613 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 NTSR2O95665 410 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 KCNQ4P56696 695 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 CCDC122Q5T0U0 273 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 STAG2Q8N3U4 1231 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 HNRNPLLQ8WVV9 542 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 PCMTD1Q96MG8 357 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 LCMT1Q9UIC8 334 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 DDX60Q8IY21 1712 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 POTEB2H3BUK9 544 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 UBA7P41226 1012 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 WHAMMP3Q1A5X7 153 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 HSP90B2PQ58FF3 399 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 TMEM60Q9H2L4 133 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 EIF3JO75822 258 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 PRDX5P30044 214 aa10.41□□□□□ -0.74
LIMCH1-215ENST00000512632 TNNT3P45378 269 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms