RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 UBXN1Q04323 297 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 ALX1Q15699 326 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 CABLES1Q8TDN4 633 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 EPB41P11171 864 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 KRT83P78385 493 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 SKOR1P84550 965 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 PAK1Q13153 545 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 RRAGBQ5VZM2 374 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 IFNL2Q8IZJ0 200 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 RUBCNQ92622 972 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 FERMT2Q96AC1 680 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 XDHP47989 1333 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 ZNF185O15231 689 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 KRT86O43790 486 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 CAGE1Q8TC20 777 aa19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 GNL3LQ9NVN8 582 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 XIRP1Q702N8 1843 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-211ENST00000506690 MYH13Q9UKX3 1938 aa19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 CCDC196A0A1B0GTZ2 297 aa19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 IQCEQ6IPM2 695 aa19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 MMGT1Q8N4V1 131 aa19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 DCAF5Q96JK2 942 aa19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 CAPN11Q9UMQ6 739 aa19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 LUC7L2Q9Y383 392 aaKnown RBP19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 TACC3Q9Y6A5 838 aa19.18■□□□□ 0.66
SQSTM1-211ENST00000506690 FAM205CA6NFA0 338 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 A6NNZ2 444 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 FNTAP49354 379 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 TUBB8Q3ZCM7 444 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 ANKRD18AQ8IVF6 992 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 STRBPQ96SI9 672 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 ZNF532Q9HCE3 1301 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 A0A1W2PQC6 194 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 OPA1O60313 960 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 C2orf54Q08AI8 447 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 MEA1Q16626 185 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 SND1Q7KZF4 910 aaKnown RBP eCLIP19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 RPAINQ86UA6 219 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 CMTR1Q8N1G2 835 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 CCDC82Q8N4S0 544 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 NELFBQ8WX92 580 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 ZNF512BQ96KM6 892 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 PURBQ96QR8 312 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 A1CFQ9NQ94 594 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 IQSEC3Q9UPP2 1182 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 TIAM2Q8IVF5 1701 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 ALS2Q96Q42 1657 aa19.17■□□□□ 0.66
SQSTM1-211ENST00000506690 TATP17735 454 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 ATP6V1AP38606 617 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 B4GALNT4Q76KP1 1039 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 ZNF572Q7Z3I7 529 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 IRF2BP1Q8IU81 584 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 MB21D1Q8N884 522 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 STAMQ92783 540 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 SHISA4Q96DD7 197 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 RRP36Q96EU6 259 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 LACRTQ9GZZ8 138 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 RABEP2Q9H5N1 569 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 CNNM2Q9H8M5 875 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 PIH1D3Q9NQM4 214 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 MYH6P13533 1939 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 MEGF6O75095 1541 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 ZNF335Q9H4Z2 1342 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 RCCD1A6NED2 376 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 CCDC172P0C7W6 258 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 ITIH3Q06033 890 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 CCDC70Q6NSX1 233 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 KIAA1328Q86T90 577 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 BLZF1Q9H2G9 400 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 SAMM50Q9Y512 469 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 RIC1Q4ADV7 1423 aa19.16■□□□□ 0.66
SQSTM1-211ENST00000506690 TCRBV5S4A2TA0A5A2 114 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 FSBPO95073 299 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 BMP15O95972 392 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 CTDSPL2Q05D32 466 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 DDR1Q08345 913 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 EARS2Q5JPH6 523 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 ZNF507Q8TCN5 953 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 AIDAQ96BJ3 306 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 EPB41L4AQ9HCS5 686 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 NLRP2Q9NX02 1062 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 LGALS16A8MUM7 142 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 PDE6AP16499 860 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 TSR1Q2NL82 804 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 TTMPQ5BVD1 217 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 ZNF658Q5TYW1 1059 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 SPATS2Q86XZ4 545 aaKnown RBP19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 CREG2Q8IUH2 290 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 FNBP4Q8N3X1 1017 aaPredicted RBP19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 CABS1Q96KC9 395 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 MTRQ99707 1265 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 KRT23Q9C075 422 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 VPS54Q9P1Q0 977 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 CAPN7Q9Y6W3 813 aa19.15■□□□□ 0.66
SQSTM1-211ENST00000506690 IDH1O75874 414 aaKnown RBP19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 IDEP14735 1019 aa19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 RCAN1P53805 252 aa19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 AKNAD1Q5T1N1 836 aa19.14■□□□□ 0.66
SQSTM1-211ENST00000506690 ALS2CLQ60I27 953 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms