RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ATP2B2Q01814 1243 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 KRT32Q14532 448 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 ZNF697Q5TEC3 545 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 NECAB2Q7Z6G3 386 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 CLEC10AQ8IUN9 316 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 ZNF280CQ8ND82 737 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 SLAIN1Q8ND83 568 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 KCNB2Q92953 911 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 FEZ1Q99689 392 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.81□□□□□ -0.52
NUP54-203ENST00000504173 KANSL2Q9H9L4 492 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 UPF2Q9HAU5 1272 aaKnown RBP11.81□□□□□ -0.52
NUP54-203ENST00000504173 ADGRA2Q96PE1 1338 aa11.81□□□□□ -0.52
NUP54-203ENST00000504173 GREB1LQ9C091 1923 aaPredicted RBP11.8□□□□□ -0.52
NUP54-203ENST00000504173 TRIM75PA6NK02 468 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 IRF6O14896 467 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 PSMC4P43686 418 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 SPP2Q13103 211 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 TSGA10IPQ3SY00 556 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 PPP4R3BQ5MIZ7 849 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 C17orf99Q6UX52 265 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 IQCA1Q86XH1 822 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 MB21D2Q8IYB1 491 aaPredicted RBP11.8□□□□□ -0.52
NUP54-203ENST00000504173 CEP95Q96GE4 821 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 PAWRQ96IZ0 340 aaKnown RBP11.8□□□□□ -0.52
NUP54-203ENST00000504173 NEK1Q96PY6 1258 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 WDR18Q9BV38 432 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 BACH2Q9BYV9 841 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 ARHGEF10LQ9HCE6 1279 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 PAK6Q9NQU5 681 aaPredicted RBP11.8□□□□□ -0.52
NUP54-203ENST00000504173 ZSWIM5Q9P217 1185 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 BIN2Q9UBW5 565 aaPredicted RBP11.8□□□□□ -0.52
NUP54-203ENST00000504173 AFG3L2Q9Y4W6 797 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 SNX14Q9Y5W7 946 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 MYPNQ86TC9 1320 aa11.8□□□□□ -0.52
NUP54-203ENST00000504173 PHIPQ8WWQ0 1821 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 IGKV6D-41A0A0C4DH26 115 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 USP17L10C9JJH3 530 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 CXCL11O14625 94 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 NMT2O60551 498 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 TTLL1O95922 423 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 TFRCP02786 760 aaKnown RBP11.79□□□□□ -0.52
NUP54-203ENST00000504173 EEF2P13639 858 aaKnown RBP11.79□□□□□ -0.52
NUP54-203ENST00000504173 SNAPC2Q13487 334 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 MTMR2Q13614 643 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 CCDC178Q5BJE1 867 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 CYB5R4Q7L1T6 521 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 ANKLE1Q8NAG6 615 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 ACER1Q8TDN7 264 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 FAM161BQ96MY7 647 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 JAKMIP1Q96N16 626 aaKnown RBP11.79□□□□□ -0.52
NUP54-203ENST00000504173 ZKSCAN3Q9BRR0 538 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 UBAC1Q9BSL1 405 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 SH2D4AQ9H788 454 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 IL17RBQ9NRM6 502 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 TCP11L1Q9NUJ3 509 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 MTMR4Q9NYA4 1195 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 STX8Q9UNK0 236 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 KCNH4Q9UQ05 1017 aa11.79□□□□□ -0.52
NUP54-203ENST00000504173 CETPP11597 493 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 PSMA5P28066 241 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 MCM5P33992 734 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 USP14P54578 494 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 BACE1P56817 501 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 SART3Q15020 963 aaKnown RBP11.78□□□□□ -0.52
NUP54-203ENST00000504173 ADCK5Q3MIX3 580 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 CHST3Q7LGC8 479 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 ZSCAN10Q96SZ4 725 aaPredicted RBP11.78□□□□□ -0.52
NUP54-203ENST00000504173 KIAA1683Q9H0B3 1180 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 NYAP2Q9P242 653 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 CLIP2Q9UDT6 1046 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 TNKSO95271 1327 aa11.78□□□□□ -0.52
NUP54-203ENST00000504173 A0A0G2JLL6 359 aaPredicted RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 A0A1W2PRG0 241 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 ERICH2A1L162 156 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 C19orf81C9J6K1 198 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 IFIT3O14879 490 aaKnown RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 PRC1O43663 620 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 RAD21O60216 631 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 HMGB1P09429 215 aaKnown RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 SYN1P17600 705 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 CASTP20810 708 aaKnown RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 HMGCS2P54868 508 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 ANAPC15P60006 121 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 ZYXQ15942 572 aaKnown RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 BLOC1S2Q6QNY1 142 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 USP17L2Q6R6M4 530 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 GADL1Q6ZQY3 521 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 DHX32Q7L7V1 743 aaKnown RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 PRRT2Q7Z6L0 340 aaPredicted RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 SIAH1Q8IUQ4 282 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 LRRC47Q8N1G4 583 aaKnown RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 DIS3LQ8TF46 1054 aaKnown RBP11.77□□□□□ -0.53
NUP54-203ENST00000504173 DEFB118Q96PH6 123 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 C22orf23Q9BZE7 217 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 TMOD4Q9NZQ9 345 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 TMX2Q9Y320 296 aa11.77□□□□□ -0.53
NUP54-203ENST00000504173 CDH23Q9H251 3354 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 BTBD19C9JJ37 291 aa11.76□□□□□ -0.53
NUP54-203ENST00000504173 FMNL1O95466 1100 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms