RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CXCL11O14625 94 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 POLR3DP05423 398 aaPredicted RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 TRDNQ13061 729 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 PSMD2Q13200 908 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 SEPT7Q16181 437 aaKnown RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 LRRC69Q6ZNQ3 347 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 FAM89AQ96GI7 184 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 IWS1Q96ST2 819 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 SH2D4AQ9H788 454 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 ACACBO00763 2458 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 A0A1B0GUL7 405 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 IRS1P35568 1242 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 NUCB1Q02818 461 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 SPP2Q13103 211 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 PPIL2Q13356 520 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 IRF5Q13568 498 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 STRIP1Q5VSL9 837 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 SHCBP1Q8NEM2 672 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 VPS37AQ8NEZ2 397 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 MRRFQ96E11 262 aaKnown RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 ZNF131P52739 623 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 LRRC41Q15345 812 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 TAF7Q15545 349 aaPredicted RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 TTC31Q49AM3 519 aaPredicted RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 METTL24Q5JXM2 366 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 LDHAL6AQ6ZMR3 332 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 WDR75Q8IWA0 830 aaKnown RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 ABI1Q8IZP0 508 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 FBXO22Q8NEZ5 403 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 RUBCNQ92622 972 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 TRIM6Q9C030 488 aaPredicted RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 SIL1Q9H173 461 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 CDC42BPGQ6DT37 1551 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 EPB41L2O43491 1005 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 VIMP08670 466 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 RRP1P56182 461 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 LMNB2Q03252 620 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 PPATQ06203 517 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 PRPF4BQ13523 1007 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 SPECC1Q5M775 1068 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 DIS3LQ8TF46 1054 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 GDF15Q99988 308 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 UBAP1Q9NZ09 502 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 CXXC1Q9P0U4 656 aaPredicted RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 CICQ96RK0 1608 aaPredicted RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 UNCXA6NJT0 531 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 M0QZ92 97 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 BAG3O95817 575 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 MAP4K4O95819 1239 aaPredicted RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 SF3A1Q15459 793 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 KLHL10Q6JEL2 608 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 UBE2Q1Q7Z7E8 422 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 FAM117AQ9C073 453 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 KLHL42Q9P2K6 505 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 ANGPTL2Q9UKU9 493 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 FZD1Q9UP38 647 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 CACNA1HO95180 2353 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 FAM208BQ5VWN6 2430 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 KIF1AQ12756 1690 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 GRXCR2A6NFK2 248 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 SMAPO00193 183 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 WNT10BO00744 389 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 PPP1R12AO14974 1030 aaPredicted RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 OFD1O75665 1012 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 LMNAP02545 664 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 MCM4P33991 863 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 PDE4BQ07343 736 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 C16orf87Q6PH81 154 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 ZGPATQ8N5A5 531 aaKnown RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 RABEP2Q9H5N1 569 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 LEMD3Q9Y2U8 911 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 ARIH1Q9Y4X5 557 aaPredicted RBP5.82□□□□□ -1.48
USP54-216ENST00000498143 GPR179Q6PRD1 2367 aa5.82□□□□□ -1.48
USP54-216ENST00000498143 IPO5O00410 1097 aaKnown RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 EGFRP00533 1210 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 XRCC6P12956 609 aaKnown RBP eCLIP5.81□□□□□ -1.48
USP54-216ENST00000498143 TBC1D8BQ0IIM8 1120 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 RAB3GAP1Q15042 981 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 TRIM60Q495X7 471 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 SLC4A10Q6U841 1118 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 ARL10Q8N8L6 244 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 CWC25Q9NXE8 425 aaPredicted RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 SEPT10Q9P0V9 454 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 PALM3A6NDB9 673 aaPredicted RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 PRR5-ARHGAP8B1AHC4 643 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 LAMTOR5O43504 91 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 SLC5A1P13866 664 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 HIBADHP31937 336 aaKnown RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 KCNQ1P51787 676 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 ARHGAP8P85298 464 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 PDCD2Q16342 344 aaPredicted RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 RRP12Q5JTH9 1297 aaKnown RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 RNF20Q5VTR2 975 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 ANKRD23Q86SG2 305 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 BRI3BPQ8WY22 251 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 ARHGAP39Q9C0H5 1083 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 HIPK3Q9H422 1215 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 USP40Q9NVE5 1235 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 TSPY2A6NKD2 308 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 TSPY3P0CV98 308 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms