RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	ASCC2	Q9H1I8	757 aa	Predicted RBP	6.29	□□□□□ -1.4
CBX3-208	ENST00000497498	SLC6A17	Q9H1V8	727 aa		6.29	□□□□□ -1.4
CBX3-208	ENST00000497498	CNNM2	Q9H8M5	875 aa		6.29	□□□□□ -1.4
CBX3-208	ENST00000497498	ADAMTS1	Q9UHI8	967 aa		6.29	□□□□□ -1.4
CBX3-208	ENST00000497498	NOTO	A8MTQ0	251 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	NPIPB6	E9PJ23	425 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	CHMP4BP1	P59074	171 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	RAD51AP2	Q09MP3	1159 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	KCNA10	Q16322	511 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	NBPF9	Q3BBW0	867 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	ZNF326	Q5BKZ1	582 aa	Known RBP	6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	OVOS1	Q6IE37	1185 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	HS2ST1	Q7LGA3	356 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	AMIGO3	Q86WK7	504 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	ZNF655	Q8N720	491 aa	Predicted RBP	6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	GIPC2	Q8TF65	315 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	KCNN1	Q92952	543 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	GGT7	Q9UJ14	662 aa		6.28	□□□□□ -1.4
CBX3-208	ENST00000497498	ZSCAN22	P10073	491 aa	Predicted RBP	6.27	□□□□□ -1.41
CBX3-208	ENST00000497498	CCNF	P41002	786 aa		6.27	□□□□□ -1.41
CBX3-208	ENST00000497498	ATG4C	Q96DT6	458 aa		6.27	□□□□□ -1.41
CBX3-208	ENST00000497498	INTS4	Q96HW7	963 aa	Known RBP	6.27	□□□□□ -1.41
CBX3-208	ENST00000497498	UBP1	Q9NZI7	540 aa		6.27	□□□□□ -1.41
CBX3-208	ENST00000497498	SMG5	Q9UPR3	1016 aa	Known RBP	6.27	□□□□□ -1.41
CBX3-208	ENST00000497498	TCAF2	A6NFQ2	919 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	PSPN	O60542	156 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	PEX10	O60683	326 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	POLR2B	P30876	1174 aa	Known RBP	6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	CLC	Q05315	142 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	SEZ6	Q53EL9	994 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	NLRC3	Q7RTR2	1065 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	TMC3	Q7Z5M5	1100 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	LINC00116	Q8NCU8	138 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	TCTN2	Q96GX1	697 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	MCOLN1	Q9GZU1	580 aa		6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	ZNF552	Q9H707	407 aa	Predicted RBP	6.26	□□□□□ -1.41
CBX3-208	ENST00000497498	MYOCOS	A0A1B0GUC4	107 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	TMEM82	A0PJX8	343 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	EFEMP2	O95967	443 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	APOBR	Q0VD83	1088 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	SNW1	Q13573	536 aa	Known RBP	6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	LDLRAD1	Q5T700	205 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	NLRX1	Q86UT6	975 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	SLITRK4	Q8IW52	837 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	NT5C1A	Q9BXI3	368 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	FOXP3	Q9BZS1	431 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	GPR160	Q9UJ42	338 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	TCFL5	Q9UL49	500 aa		6.25	□□□□□ -1.41
CBX3-208	ENST00000497498	MEIS3P2	A8K0S8	358 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	SIGLEC6	O43699	453 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	SEMA7A	O75326	666 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	CLEC3A	O75596	197 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	NME1	P15531	152 aa	Known RBP	6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	RPL10	P27635	214 aa	Known RBP	6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	KIR2DL1	P43626	348 aa	Predicted RBP	6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	KIR2DL2	P43627	348 aa	Predicted RBP	6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	ZNF165	P49910	485 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	PCBP3	P57721	371 aa	Known RBP	6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	LINC00310	P59036	64 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	LRRFIP1	Q32MZ4	808 aa	Known RBP	6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	GK5	Q6ZS86	529 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	WAPL	Q7Z5K2	1190 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	ZNF605	Q86T29	641 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	MAP6	Q96JE9	813 aa		6.24	□□□□□ -1.41
CBX3-208	ENST00000497498	TEX51	A0A1B0GUA7	166 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	TNFRSF10C	O14798	259 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	NRDC	O43847	1150 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	PRAMEF1	O95521	474 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	DLG4	P78352	724 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	BBS9	Q3SYG4	887 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	CIAPIN1	Q6FI81	312 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	KRTAP4-9	Q9BYQ8	210 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	PRDM14	Q9GZV8	571 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	BCL11A	Q9H165	835 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	ANTXR1	Q9H6X2	564 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	ZMYM5	Q9UJ78	669 aa		6.23	□□□□□ -1.41
CBX3-208	ENST00000497498	USP2	O75604	605 aa	Predicted RBP	6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	PDE6B	P35913	854 aa		6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	TMEM192	Q8IY95	271 aa		6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	NKD1	Q969G9	470 aa		6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	EAF1	Q96JC9	268 aa	Predicted RBP	6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	HHIPL1	Q96JK4	782 aa		6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	GCM1	Q9NP62	436 aa		6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	CRTAC1	Q9NQ79	661 aa		6.22	□□□□□ -1.41
CBX3-208	ENST00000497498	SSU72P8	A0A1W2PR75	194 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	KRTAP9-7	A8MTY7	169 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	HRK	O00198	91 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	SYP	P08247	313 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	MCM4	P33991	863 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	GALK1	P51570	392 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	INTS3	Q68E01	1043 aa	Known RBP	6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	ZNF512B	Q96KM6	892 aa	Predicted RBP	6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	SLC6A18	Q96N87	628 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	RAPGEFL1	Q9UHV5	662 aa		6.21	□□□□□ -1.42
CBX3-208	ENST00000497498	OR14I1	A6ND48	311 aa		6.2	□□□□□ -1.42
CBX3-208	ENST00000497498	NUAK1	O60285	661 aa		6.2	□□□□□ -1.42
CBX3-208	ENST00000497498	ZNF16	P17020	682 aa	Predicted RBP	6.2	□□□□□ -1.42
CBX3-208	ENST00000497498	SLC14A2	Q15849	920 aa		6.2	□□□□□ -1.42
CBX3-208	ENST00000497498	ZPBP2	Q6X784	338 aa		6.2	□□□□□ -1.42
CBX3-208	ENST00000497498	CEP128	Q6ZU80	1094 aa		6.2	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms