RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 GPATCH4Q5T3I0 446 aaKnown RBP25.39■■□□□ 1.66
C9orf3-222ENST00000496567 MICU3Q86XE3 530 aa25.39■■□□□ 1.66
C9orf3-222ENST00000496567 REM2Q8IYK8 340 aaPredicted RBP25.39■■□□□ 1.66
C9orf3-222ENST00000496567 CTCFLQ8NI51 663 aaPredicted RBP25.39■■□□□ 1.66
C9orf3-222ENST00000496567 BRI3BPQ8WY22 251 aa25.39■■□□□ 1.66
C9orf3-222ENST00000496567 MYL10Q9BUA6 226 aa25.39■■□□□ 1.66
C9orf3-222ENST00000496567 GOLGA8BA8MQT2 603 aa25.39■■□□□ 1.65
C9orf3-222ENST00000496567 PARP1P09874 1014 aaKnown RBP25.39■■□□□ 1.65
C9orf3-222ENST00000496567 KIF5BP33176 963 aa25.39■■□□□ 1.65
C9orf3-222ENST00000496567 VEGFBP49765 207 aa25.39■■□□□ 1.65
C9orf3-222ENST00000496567 FAM83BQ5T0W9 1011 aa25.39■■□□□ 1.65
C9orf3-222ENST00000496567 RPAP3Q9H6T3 665 aaPredicted RBP25.39■■□□□ 1.65
C9orf3-222ENST00000496567 ISY1Q9ULR0 285 aaKnown RBP25.39■■□□□ 1.65
C9orf3-222ENST00000496567 LIMCH1Q9UPQ0 1083 aa25.39■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L15C9J2P7 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L13C9JLJ4 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L11C9JVI0 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L18D6R9N7 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L22D6RA61 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L17D6RBQ6 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L19D6RCP7 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L20D6RJB6 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 KIF23Q02241 960 aaPredicted RBP25.38■■□□□ 1.65
C9orf3-222ENST00000496567 ZNF543Q08ER8 600 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 USP17L24Q0WX57 530 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 GRM4Q14833 912 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 PPP2R5BQ15173 497 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 NOL8Q76FK4 1167 aaKnown RBP25.38■■□□□ 1.65
C9orf3-222ENST00000496567 CHMP4CQ96CF2 233 aa25.38■■□□□ 1.65
C9orf3-222ENST00000496567 NUP88Q99567 741 aaPredicted RBP25.38■■□□□ 1.65
C9orf3-222ENST00000496567 LARP6Q9BRS8 491 aaKnown RBP25.38■■□□□ 1.65
C9orf3-222ENST00000496567 PDIA3P30101 505 aaKnown RBP25.37■■□□□ 1.65
C9orf3-222ENST00000496567 HOXA7P31268 230 aaPredicted RBP25.37■■□□□ 1.65
C9orf3-222ENST00000496567 MAP2K2P36507 400 aa25.37■■□□□ 1.65
C9orf3-222ENST00000496567 METAP2P50579 478 aaKnown RBP eCLIP25.37■■□□□ 1.65
C9orf3-222ENST00000496567 TREML2Q5T2D2 321 aa25.37■■□□□ 1.65
C9orf3-222ENST00000496567 ANKRD23Q86SG2 305 aa25.37■■□□□ 1.65
C9orf3-222ENST00000496567 FANCBQ8NB91 859 aa25.37■■□□□ 1.65
C9orf3-222ENST00000496567 TANGO6Q9C0B7 1094 aa25.37■■□□□ 1.65
C9orf3-222ENST00000496567 TPCN1Q9ULQ1 816 aa25.37■■□□□ 1.65
C9orf3-222ENST00000496567 SLC45A1Q9Y2W3 748 aa25.37■■□□□ 1.65
C9orf3-222ENST00000496567 GOLGA8AA7E2F4 631 aa25.36■■□□□ 1.65
C9orf3-222ENST00000496567 AOC2O75106 756 aa25.36■■□□□ 1.65
C9orf3-222ENST00000496567 OTUD7BQ6GQQ9 843 aa25.36■■□□□ 1.65
C9orf3-222ENST00000496567 GPAT2Q6NUI2 795 aa25.36■■□□□ 1.65
C9orf3-222ENST00000496567 KCTD1Q719H9 257 aa25.36■■□□□ 1.65
C9orf3-222ENST00000496567 ZSCAN31Q96LW9 406 aaPredicted RBP25.36■■□□□ 1.65
C9orf3-222ENST00000496567 FEM1BQ9UK73 627 aa25.36■■□□□ 1.65
C9orf3-222ENST00000496567 FRMPD2Q68DX3 1309 aaPredicted RBP25.36■■□□□ 1.65
C9orf3-222ENST00000496567 BTBD19C9JJ37 291 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 RXRAP19793 462 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 TM4SF4P48230 202 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 CATSPERGQ6ZRH7 1159 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 RASGRP2Q7LDG7 609 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 RAB11FIP4Q86YS3 637 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 CHURC1Q8WUH1 139 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 ZCCHC17Q9NP64 241 aaKnown RBP25.35■■□□□ 1.65
C9orf3-222ENST00000496567 RBM28Q9NW13 759 aaKnown RBP25.35■■□□□ 1.65
C9orf3-222ENST00000496567 MAD2L2Q9UI95 211 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 NID2Q14112 1375 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 CCDC196A0A1B0GTZ2 297 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 PALM3A6NDB9 673 aaPredicted RBP25.35■■□□□ 1.65
C9orf3-222ENST00000496567 TMEM232C9JQI7 657 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 GNAQP50148 359 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 STAT2P52630 851 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 RTN1Q16799 776 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 FAM160B2Q86V87 743 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 CCDC144CPQ8IYA2 1237 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 ZIC5Q96T25 663 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 PTPN18Q99952 460 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 SLKQ9H2G2 1235 aaPredicted RBP25.35■■□□□ 1.65
C9orf3-222ENST00000496567 GPCPD1Q9NPB8 672 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 PNMA3Q9UL41 463 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 HPS5Q9UPZ3 1129 aa25.35■■□□□ 1.65
C9orf3-222ENST00000496567 PLA2G6O60733 806 aa25.34■■□□□ 1.65
C9orf3-222ENST00000496567 GOLGA8HP0CJ92 632 aa25.34■■□□□ 1.65
C9orf3-222ENST00000496567 OSBPP22059 807 aa25.34■■□□□ 1.65
C9orf3-222ENST00000496567 IKQ13123 557 aaPredicted RBP25.34■■□□□ 1.65
C9orf3-222ENST00000496567 PDHXO00330 501 aa25.33■■□□□ 1.65
C9orf3-222ENST00000496567 FLOT1O75955 427 aa25.33■■□□□ 1.65
C9orf3-222ENST00000496567 IRX3P78415 501 aaPredicted RBP25.33■■□□□ 1.65
C9orf3-222ENST00000496567 IFNL1Q8IU54 200 aa25.33■■□□□ 1.65
C9orf3-222ENST00000496567 LZTS2Q9BRK4 669 aa25.33■■□□□ 1.65
C9orf3-222ENST00000496567 SH2B1Q9NRF2 756 aaPredicted RBP25.33■■□□□ 1.65
C9orf3-222ENST00000496567 KLRF2D3W0D1 207 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 PFKFB2O60825 505 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 CD2BP2O95400 341 aaKnown RBP25.32■■□□□ 1.64
C9orf3-222ENST00000496567 STK3Q13188 491 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 COG2Q14746 738 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 ME3Q16798 604 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 BTNL9Q6UXG8 535 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 FAM43AQ8N2R8 423 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 STAG2Q8N3U4 1231 aa25.32■■□□□ 1.64
C9orf3-222ENST00000496567 IGF2BP3O00425 579 aaKnown RBP eCLIP25.31■■□□□ 1.64
C9orf3-222ENST00000496567 CCT2P78371 535 aaKnown RBP25.31■■□□□ 1.64
C9orf3-222ENST00000496567 PRPF38AQ8NAV1 312 aaKnown RBP25.31■■□□□ 1.64
C9orf3-222ENST00000496567 SNX21Q969T3 373 aa25.31■■□□□ 1.64
C9orf3-222ENST00000496567 SLF1Q9BQI6 1058 aa25.31■■□□□ 1.64
C9orf3-222ENST00000496567 ASCC2Q9H1I8 757 aaPredicted RBP25.31■■□□□ 1.64
C9orf3-222ENST00000496567 HOXC10Q9NYD6 342 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 206.7 ms