RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 FBXL21Q9UKT6 434 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 RNF114Q9Y508 228 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 PCDHB12Q9Y5F1 795 aa9.34□□□□□ -0.91
SF3B1-212ENST00000496458 PRAMEF1O95521 474 aa9.33□□□□□ -0.92
SF3B1-212ENST00000496458 GDNFP39905 211 aa9.33□□□□□ -0.92
SF3B1-212ENST00000496458 HK2P52789 917 aa9.33□□□□□ -0.92
SF3B1-212ENST00000496458 AUHQ13825 339 aaKnown RBP9.33□□□□□ -0.92
SF3B1-212ENST00000496458 PPFIBP1Q86W92 1011 aa9.33□□□□□ -0.92
SF3B1-212ENST00000496458 SHDQ96IW2 340 aa9.33□□□□□ -0.92
SF3B1-212ENST00000496458 ADAMTS10Q9H324 1103 aa9.33□□□□□ -0.92
SF3B1-212ENST00000496458 MINPP1Q9UNW1 487 aa9.33□□□□□ -0.92
SF3B1-212ENST00000496458 E9PSI1 815 aa9.32□□□□□ -0.92
SF3B1-212ENST00000496458 SIGLEC6O43699 453 aa9.32□□□□□ -0.92
SF3B1-212ENST00000496458 DAGLBQ8NCG7 672 aa9.32□□□□□ -0.92
SF3B1-212ENST00000496458 OR6P1Q8NGX9 317 aa9.32□□□□□ -0.92
SF3B1-212ENST00000496458 FAM168AQ92567 244 aa9.32□□□□□ -0.92
SF3B1-212ENST00000496458 TCTN2Q96GX1 697 aa9.32□□□□□ -0.92
SF3B1-212ENST00000496458 GFOD1Q9NXC2 390 aa9.32□□□□□ -0.92
SF3B1-212ENST00000496458 CARMIL2Q6F5E8 1435 aa9.31□□□□□ -0.92
SF3B1-212ENST00000496458 MEIS1O00470 390 aa9.31□□□□□ -0.92
SF3B1-212ENST00000496458 AFMP43652 599 aa9.31□□□□□ -0.92
SF3B1-212ENST00000496458 TEKQ02763 1124 aa9.31□□□□□ -0.92
SF3B1-212ENST00000496458 ZNF655Q8N720 491 aaPredicted RBP9.31□□□□□ -0.92
SF3B1-212ENST00000496458 CHST7Q9NS84 486 aa9.31□□□□□ -0.92
SF3B1-212ENST00000496458 TP53P04637 393 aaPredicted RBP9.3□□□□□ -0.92
SF3B1-212ENST00000496458 ATF4P18848 351 aaPredicted RBP9.3□□□□□ -0.92
SF3B1-212ENST00000496458 FYB2Q5VWT5 728 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 DCAF15Q66K64 600 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 ZSWIM9Q86XI8 627 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 C7orf61Q8IZ16 206 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 USHBP1Q8N6Y0 703 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 SMARCC1Q92922 1105 aaPredicted RBP9.3□□□□□ -0.92
SF3B1-212ENST00000496458 SYTL4Q96C24 671 aaPredicted RBP9.3□□□□□ -0.92
SF3B1-212ENST00000496458 FOXP3Q9BZS1 431 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 STRIP2Q9ULQ0 834 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 LTBP3Q9NS15 1303 aa9.3□□□□□ -0.92
SF3B1-212ENST00000496458 SHOXO15266 292 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 ZGLP1P0C6A0 271 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 RAC2P15153 192 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 PCBP3P57721 371 aaKnown RBP9.29□□□□□ -0.92
SF3B1-212ENST00000496458 ERVFC1P60507 584 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 GNL2Q13823 731 aaKnown RBP9.29□□□□□ -0.92
SF3B1-212ENST00000496458 PPP2R5EQ16537 467 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 KCNMB1Q16558 191 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 AXDND1Q5T1B0 1012 aaPredicted RBP9.29□□□□□ -0.92
SF3B1-212ENST00000496458 RNF111Q6ZNA4 994 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 C19orf47Q8N9M1 422 aaKnown RBP9.29□□□□□ -0.92
SF3B1-212ENST00000496458 ANAPC16Q96DE5 110 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 KIRREL1Q96J84 757 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 TCFL5Q9UL49 500 aa9.29□□□□□ -0.92
SF3B1-212ENST00000496458 ZNF214Q9UL59 606 aaPredicted RBP9.29□□□□□ -0.92
SF3B1-212ENST00000496458 A0A1W2PQH9 124 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 SSU72P8A0A1W2PR75 194 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 SYPP08247 313 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 BBS9Q3SYG4 887 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 VPS37DQ86XT2 251 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 FAM169BQ8N8A8 192 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 KRTAP4-8Q9BYQ9 185 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 SLC12A7Q9Y666 1083 aa9.28□□□□□ -0.92
SF3B1-212ENST00000496458 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.28□□□□□ -0.92
SF3B1-212ENST00000496458 FKTNO75072 461 aa9.27□□□□□ -0.93
SF3B1-212ENST00000496458 RPL10P27635 214 aaKnown RBP9.27□□□□□ -0.93
SF3B1-212ENST00000496458 DHX38Q92620 1227 aaKnown RBP9.27□□□□□ -0.93
SF3B1-212ENST00000496458 FMNL2Q96PY5 1086 aa9.27□□□□□ -0.93
SF3B1-212ENST00000496458 TINF2Q9BSI4 451 aa9.27□□□□□ -0.93
SF3B1-212ENST00000496458 DSCC1Q9BVC3 393 aa9.27□□□□□ -0.93
SF3B1-212ENST00000496458 IGSF5Q9NSI5 407 aa9.27□□□□□ -0.93
SF3B1-212ENST00000496458 PCDHB10Q9UN67 800 aa9.27□□□□□ -0.93
SF3B1-212ENST00000496458 GNPTABQ3T906 1256 aa9.26□□□□□ -0.93
SF3B1-212ENST00000496458 WAPLQ7Z5K2 1190 aa9.26□□□□□ -0.93
SF3B1-212ENST00000496458 LINC00116Q8NCU8 138 aa9.26□□□□□ -0.93
SF3B1-212ENST00000496458 PDZD8Q8NEN9 1154 aa9.26□□□□□ -0.93
SF3B1-212ENST00000496458 PHAXQ9H814 394 aaKnown RBP9.26□□□□□ -0.93
SF3B1-212ENST00000496458 PRR13Q9NZ81 148 aa9.26□□□□□ -0.93
SF3B1-212ENST00000496458 HPXP02790 462 aa9.25□□□□□ -0.93
SF3B1-212ENST00000496458 SSBP05455 408 aaKnown RBP eCLIP9.25□□□□□ -0.93
SF3B1-212ENST00000496458 CTSKP43235 329 aa9.25□□□□□ -0.93
SF3B1-212ENST00000496458 DUSP4Q13115 394 aa9.25□□□□□ -0.93
SF3B1-212ENST00000496458 CRTC3Q6UUV7 619 aa9.25□□□□□ -0.93
SF3B1-212ENST00000496458 MYLIPQ8WY64 445 aa9.25□□□□□ -0.93
SF3B1-212ENST00000496458 GP6Q9HCN6 339 aa9.25□□□□□ -0.93
SF3B1-212ENST00000496458 MRVI1Q9Y6F6 885 aa9.25□□□□□ -0.93
SF3B1-212ENST00000496458 GLI1P08151 1106 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 TRHRP34981 398 aaPredicted RBP9.24□□□□□ -0.93
SF3B1-212ENST00000496458 ANKRD39Q53RE8 183 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 TMEM67Q5HYA8 995 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 NOL9Q5SY16 702 aaKnown RBP9.24□□□□□ -0.93
SF3B1-212ENST00000496458 OXR1Q8N573 874 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 ABHD4Q8TB40 342 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 BRF1Q92994 677 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 EBF1Q9UH73 591 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 ZMYM5Q9UJ78 669 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 ZNF451Q9Y4E5 1061 aa9.24□□□□□ -0.93
SF3B1-212ENST00000496458 TMEM82A0PJX8 343 aa9.23□□□□□ -0.93
SF3B1-212ENST00000496458 CBFA2T2O43439 604 aa9.23□□□□□ -0.93
SF3B1-212ENST00000496458 CD247P20963 164 aa9.23□□□□□ -0.93
SF3B1-212ENST00000496458 CASP7P55210 303 aa9.23□□□□□ -0.93
SF3B1-212ENST00000496458 ZNF445P59923 1031 aa9.23□□□□□ -0.93
SF3B1-212ENST00000496458 SLC7A5Q01650 507 aa9.23□□□□□ -0.93
SF3B1-212ENST00000496458 ZPBP2Q6X784 338 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms