RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 SND1Q7KZF4 910 aaKnown RBP eCLIP21.17■□□□□ 0.98
COL27A1-207ENST00000494090 GPR108Q9NPR9 543 aa21.17■□□□□ 0.98
COL27A1-207ENST00000494090 CEP170Q5SW79 1584 aa21.17■□□□□ 0.98
COL27A1-207ENST00000494090 BAG6P46379 1132 aa21.17■□□□□ 0.98
COL27A1-207ENST00000494090 TPD52P55327 224 aaPredicted RBP21.17■□□□□ 0.98
COL27A1-207ENST00000494090 LGSNQ5TDP6 509 aa21.17■□□□□ 0.98
COL27A1-207ENST00000494090 RASEFQ8IZ41 740 aa21.17■□□□□ 0.98
COL27A1-207ENST00000494090 MRPL44Q9H9J2 332 aaKnown RBP21.17■□□□□ 0.98
COL27A1-207ENST00000494090 RTEL1Q9NZ71 1219 aa21.17■□□□□ 0.98
COL27A1-207ENST00000494090 NEO1Q92859 1461 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 LRMPQ12912 555 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 TRIM58Q8NG06 486 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 GCNT3O95395 438 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 ATP2B4P23634 1241 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 INPP5BP32019 993 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 NDUFA8P51970 172 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 PEX26Q7Z412 305 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 ATP7BP35670 1465 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 ETF1P62495 437 aaKnown RBP21.16■□□□□ 0.98
COL27A1-207ENST00000494090 TBC1D31Q96DN5 1066 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 SLAIN2Q9P270 581 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 CDC25BP30305 580 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 C2CD5Q86YS7 1000 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 PPFIBP2Q8ND30 876 aa21.16■□□□□ 0.98
COL27A1-207ENST00000494090 H0YCG3 227 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 NOL3O60936 208 aaKnown RBP21.15■□□□□ 0.98
COL27A1-207ENST00000494090 ITIH3Q06033 890 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 FBXO18Q8NFZ0 1043 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 TRIM31Q9BZY9 425 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 ZNF408Q9H9D4 720 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 CUL4AQ13619 759 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 ADCK5Q3MIX3 580 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 PPP1R21Q6ZMI0 780 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 TTLL7Q6ZT98 887 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 RSRC1Q96IZ7 334 aaKnown RBP21.15■□□□□ 0.98
COL27A1-207ENST00000494090 USP21Q9UK80 565 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 EFCAB8A8MWE9 144 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 PPIP5K2O43314 1243 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 CIB2O75838 187 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 UBE3CQ15386 1083 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 LRRC24Q50LG9 513 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 GALNT17Q6IS24 598 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 TDRD7Q8NHU6 1098 aaKnown RBP21.15■□□□□ 0.98
COL27A1-207ENST00000494090 PSMB7Q99436 277 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 SPC25Q9HBM1 224 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 USP40Q9NVE5 1235 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 TNKSO95271 1327 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 GTPBP6O43824 516 aaPredicted RBP21.15■□□□□ 0.98
COL27A1-207ENST00000494090 UAP1Q16222 522 aaPredicted RBP21.15■□□□□ 0.98
COL27A1-207ENST00000494090 DCAF15Q66K64 600 aa21.15■□□□□ 0.98
COL27A1-207ENST00000494090 FEZ2Q9UHY8 353 aaPredicted RBP21.15■□□□□ 0.98
COL27A1-207ENST00000494090 SPATA1Q5VX52 437 aa21.14■□□□□ 0.98
COL27A1-207ENST00000494090 GBP6Q6ZN66 633 aa21.14■□□□□ 0.98
COL27A1-207ENST00000494090 FANCLQ9NW38 375 aa21.14■□□□□ 0.98
COL27A1-207ENST00000494090 GIPC1O14908 333 aa21.14■□□□□ 0.98
COL27A1-207ENST00000494090 CSADQ9Y600 493 aa21.14■□□□□ 0.98
COL27A1-207ENST00000494090 CLIC4Q9Y696 253 aa21.14■□□□□ 0.98
COL27A1-207ENST00000494090 MLH3Q9UHC1 1453 aa21.14■□□□□ 0.98
COL27A1-207ENST00000494090 CIAO1O76071 339 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 DDAH1O94760 285 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 USH1GQ495M9 461 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 UNC5CLQ8IV45 518 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 GOLGA5Q8TBA6 731 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 PSDA5PKW4 1024 aaPredicted RBP21.14■□□□□ 0.97
COL27A1-207ENST00000494090 SRGAP1Q7Z6B7 1085 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 BEGAINQ9BUH8 593 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 GINS2Q9Y248 185 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 DDX39AO00148 427 aaKnown RBP21.14■□□□□ 0.97
COL27A1-207ENST00000494090 ARHGAP25P42331 645 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 GEN1Q17RS7 908 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 ZMYM1Q5SVZ6 1142 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 VPS52Q8N1B4 723 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 PLCD3Q8N3E9 789 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 PLCB1Q9NQ66 1216 aa21.14■□□□□ 0.97
COL27A1-207ENST00000494090 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.13■□□□□ 0.97
COL27A1-207ENST00000494090 GAS7O60861 476 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 PCP11498 1178 aaKnown RBP21.13■□□□□ 0.97
COL27A1-207ENST00000494090 CD19P15391 556 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 CMTR1Q8N1G2 835 aaKnown RBP21.13■□□□□ 0.97
COL27A1-207ENST00000494090 ASIC3Q9UHC3 531 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 PCDHB13Q9Y5F0 798 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 BTBD18B2RXH4 712 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 SCG2P13521 617 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 PABPC4Q13310 644 aaKnown RBP eCLIP21.13■□□□□ 0.97
COL27A1-207ENST00000494090 MFSD14BQ5SR56 506 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 NLRC4Q9NPP4 1024 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 PRPF6O94906 941 aaKnown RBP21.13■□□□□ 0.97
COL27A1-207ENST00000494090 MYOCDQ8IZQ8 938 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 ERCC3P19447 782 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 TCP10Q12799 353 aa21.13■□□□□ 0.97
COL27A1-207ENST00000494090 LPXNO60711 386 aa21.12■□□□□ 0.97
COL27A1-207ENST00000494090 ZNF853P0CG23 659 aa21.12■□□□□ 0.97
COL27A1-207ENST00000494090 RAD51AP2Q09MP3 1159 aa21.12■□□□□ 0.97
COL27A1-207ENST00000494090 DESI2Q9BSY9 194 aa21.12■□□□□ 0.97
COL27A1-207ENST00000494090 CARD10Q9BWT7 1032 aa21.12■□□□□ 0.97
COL27A1-207ENST00000494090 MRPL11Q9Y3B7 192 aaKnown RBP21.12■□□□□ 0.97
COL27A1-207ENST00000494090 ECM2O94769 699 aaPredicted RBP21.12■□□□□ 0.97
COL27A1-207ENST00000494090 LSM14BQ9BX40 385 aaKnown RBP21.12■□□□□ 0.97
COL27A1-207ENST00000494090 NACA2Q9H009 215 aa21.12■□□□□ 0.97
COL27A1-207ENST00000494090 HAUS4Q9H6D7 363 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms