RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 IWS1Q96ST2 819 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 CCDC94Q9BW85 323 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 TAB2Q9NYJ8 693 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 PPARAQ07869 468 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 G2E3Q7L622 706 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 FAM76AQ8TAV0 307 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 FEZ2Q9UHY8 353 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 ANAPC5Q9UJX4 755 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 PCDHB15Q9Y5E8 787 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 DMP1Q13316 513 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 ZHX1Q9UKY1 873 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 S100BP04271 92 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 GYG1P46976 350 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 SPDYE1Q8NFV5 336 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 SEPT9Q9UHD8 586 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 PPP2R5AQ15172 486 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 SFMBT2Q5VUG0 894 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 CCDC62Q6P9F0 684 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 PALM2Q8IXS6 379 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 CCDC170Q8IYT3 715 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 PHACTR3Q96KR7 559 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 GCNAQ96QF7 691 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 PSMB7Q99436 277 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 RBSNQ9H1K0 784 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 KDM3AQ9Y4C1 1321 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 TMEM232C9JQI7 657 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 CTSWP56202 376 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 TFDP1Q14186 410 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 NELFBQ8WX92 580 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 SECISBP2LQ93073 1101 aaKnown RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 RILPQ96NA2 401 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 NT5C3AQ9H0P0 336 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 ASXL1Q8IXJ9 1541 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 PTPREP23469 700 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 HADHQ16836 314 aaKnown RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 NBPF11Q86T75 865 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 STAMQ92783 540 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 ARHGEF2Q92974 986 aaKnown RBP14.48□□□□□ -0.09
COL6A3-212ENST00000491769 SUCLG2Q96I99 432 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 ABCF3Q9NUQ8 709 aa14.48□□□□□ -0.09
COL6A3-212ENST00000491769 FMNL1O95466 1100 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-212ENST00000491769 PPP4R4Q6NUP7 873 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 C1orf228Q6PIY5 440 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 POLIQ9UNA4 740 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 IFNB1P01574 187 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 ABCB5Q2M3G0 1257 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 ELMSAN1Q6PJG2 1045 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 PLA2G4DQ86XP0 818 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 CEP120Q8N960 986 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 PPP4R1Q8TF05 950 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 DISC1Q9NRI5 854 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 C1orf112Q9NSG2 853 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 GOLGA8CPA6NN73 597 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 EBAG9O00559 213 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 NLGN1Q8N2Q7 840 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 DCLK2Q8N568 766 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 NUP58Q9BVL2 599 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 LSM14BQ9BX40 385 aaKnown RBP14.47□□□□□ -0.09
COL6A3-212ENST00000491769 VAMP4O75379 141 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 SUPT20HL1Q3ZLR7 823 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 TAB3Q8N5C8 712 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-212ENST00000491769 MCUR1Q96AQ8 359 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 PRIMPOLQ96LW4 560 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 UBN1Q9NPG3 1134 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 POLR2BP30876 1174 aaKnown RBP14.47□□□□□ -0.09
COL6A3-212ENST00000491769 U2AF1L4Q8WU68 220 aaKnown RBP14.47□□□□□ -0.09
COL6A3-212ENST00000491769 VCX3BQ9H321 246 aa14.47□□□□□ -0.09
COL6A3-212ENST00000491769 PIK3CAP42336 1068 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 USPL1Q5W0Q7 1092 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 SYCE1Q8N0S2 351 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 KRT12Q99456 494 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 NAPGQ99747 312 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-212ENST00000491769 GOLGA8HP0CJ92 632 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 TTLL7Q6ZT98 887 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 PEX26Q7Z412 305 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 DACT3Q96B18 629 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-212ENST00000491769 FAM227BQ96M60 508 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 FTOQ9C0B1 505 aaKnown RBP eCLIP14.46□□□□□ -0.09
COL6A3-212ENST00000491769 USP17L12C9JPN9 530 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 USP17L21D6R901 530 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 CUTAO60888 179 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 SPICE1Q8N0Z3 855 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 XPOTO43592 962 aaKnown RBP14.46□□□□□ -0.09
COL6A3-212ENST00000491769 TECP42680 631 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 BCAMP50895 628 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 ATP11AP98196 1134 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 PPP1R16BQ96T49 567 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 DCTPP1Q9H773 170 aa14.46□□□□□ -0.09
COL6A3-212ENST00000491769 IPO11Q9UI26 975 aaKnown RBP14.46□□□□□ -0.09
COL6A3-212ENST00000491769 CUL7Q14999 1698 aa14.46□□□□□ -0.1
COL6A3-212ENST00000491769 ABCB4P21439 1286 aa14.46□□□□□ -0.1
COL6A3-212ENST00000491769 SLITRK6Q9H5Y7 841 aa14.46□□□□□ -0.1
COL6A3-212ENST00000491769 ZNF518AQ6AHZ1 1483 aa14.46□□□□□ -0.1
COL6A3-212ENST00000491769 SF3A3Q12874 501 aaKnown RBP eCLIP14.45□□□□□ -0.1
COL6A3-212ENST00000491769 NLRC4Q9NPP4 1024 aa14.45□□□□□ -0.1
COL6A3-212ENST00000491769 BNIP3LO60238 219 aa14.45□□□□□ -0.1
COL6A3-212ENST00000491769 ELF1P32519 619 aa14.45□□□□□ -0.1
COL6A3-212ENST00000491769 KRT33BQ14525 404 aa14.45□□□□□ -0.1
COL6A3-212ENST00000491769 ATL3Q6DD88 541 aa14.45□□□□□ -0.1
COL6A3-212ENST00000491769 BBS5Q8N3I7 341 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms