RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 RABL2AQ9UBK7 228 aaPredicted RBP7.96□□□□□ -1.13
SYNE1-228ENST00000490135 M0QZ92 97 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 PFDN6O15212 129 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 CHGBP05060 677 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 MAGEA8P43361 318 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 HAND2P61296 217 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 TMTC4Q5T4D3 741 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 JADE1Q6IE81 842 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 LDHAL6AQ6ZMR3 332 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 OPTNQ96CV9 577 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 RPGRIP1Q96KN7 1286 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 OLFM3Q96PB7 478 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 SIKE1Q9BRV8 207 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 CARD9Q9H257 536 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 HMG20BQ9P0W2 317 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 MYO1AQ9UBC5 1043 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 F8W031 263 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-228ENST00000490135 EXOC5O00471 708 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 N4BP1O75113 896 aaKnown RBP7.96□□□□□ -1.14
SYNE1-228ENST00000490135 NMIQ13287 307 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-228ENST00000490135 ANKRD23Q86SG2 305 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 CROCCP2Q86T23 111 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 MRPS27Q92552 414 aaKnown RBP7.96□□□□□ -1.14
SYNE1-228ENST00000490135 GFM2Q969S9 779 aaKnown RBP7.96□□□□□ -1.14
SYNE1-228ENST00000490135 NGLY1Q96IV0 654 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 IWS1Q96ST2 819 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 TNNQ9UQP3 1299 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 TTLL3Q9Y4R7 772 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 CD2APQ9Y5K6 639 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 RTEL1-TNFRSF6BF6WH68 1400 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 ZBTB43O43298 467 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 TNFAIP3P21580 790 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 STRN3Q13033 797 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 USP4Q13107 963 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC93Q567U6 631 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 CDAN1Q8IWY9 1227 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 SIX5Q8N196 739 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 UBL4BQ8N7F7 174 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 PDZD8Q8NEN9 1154 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 FBXO41Q8TF61 875 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 IQCDQ96DY2 449 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 NOD2Q9HC29 1040 aa7.96□□□□□ -1.14
SYNE1-228ENST00000490135 UTP11Q9Y3A2 253 aaKnown RBP7.96□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC141Q6ZP82 1450 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 GOLGA8CPA6NN73 597 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 SMAPO00193 183 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ADAMTS2O95450 1211 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 PYGBP11216 843 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ATP4AP20648 1035 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 BASP1P80723 227 aaKnown RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 MRPS35P82673 323 aaKnown RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ROR2Q01974 943 aaKnown RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 KLC1Q07866 573 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ZC3H18Q86VM9 953 aaKnown RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 MAIP1Q8WWC4 291 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 CNGB3Q9NQW8 809 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 CABP1Q9NZU7 370 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 H3BQF6 201 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 KRT75O95678 551 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 VIL1P09327 827 aaKnown RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 TNNI2P48788 182 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 RASSF2P50749 326 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 MTX1Q13505 466 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 VWA3BQ502W6 1294 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 DYDC2Q96IM9 177 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 CLMNQ96JQ2 1002 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ALG1Q9BT22 464 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 NDEL1Q9GZM8 345 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 HFM1A2PYH4 1435 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 SMCR8Q8TEV9 937 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ZNF473Q8WTR7 871 aaKnown RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 MPP4Q96JB8 637 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 Q9H521 79 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ZC4H2Q9NQZ6 224 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 TUBA8Q9NY65 449 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ATP6V1G1O75348 118 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC144BQ3MJ40 725 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 PPP4R4Q6NUP7 873 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 ZNF804AQ7Z570 1209 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 JDP2Q8WYK2 163 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 RILPQ96NA2 401 aa7.95□□□□□ -1.14
SYNE1-228ENST00000490135 KLF18A0A0U1RQI7 1052 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 CFAP73A6NFT4 308 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 COQ9O75208 318 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 ABL2P42684 1182 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 RAP1GDS1P52306 607 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 DDR1Q08345 913 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 CNGA4Q8IV77 575 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 PPP4R1Q8TF05 950 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 ZKSCAN3Q9BRR0 538 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 MRPL46Q9H2W6 279 aaKnown RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 EXOC7Q9UPT5 735 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 NR1D1P20393 614 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 CYP7A1P22680 504 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 WAPLQ7Z5K2 1190 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 RBM12BQ8IXT5 1001 aaKnown RBP7.94□□□□□ -1.14
SYNE1-228ENST00000490135 CCDC13Q8IYE1 715 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 HACE1Q8IYU2 909 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 NECAB1Q8N987 351 aa7.94□□□□□ -1.14
SYNE1-228ENST00000490135 DESI2Q9BSY9 194 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms