RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ZNF445P59923 1031 aa13.49□□□□□ -0.25
TRIM40-208ENST00000489892 ATP2B2Q01814 1243 aa13.49□□□□□ -0.25
TRIM40-208ENST00000489892 GRM1Q13255 1194 aa13.49□□□□□ -0.25
TRIM40-208ENST00000489892 RAB11FIP4Q86YS3 637 aa13.49□□□□□ -0.25
TRIM40-208ENST00000489892 ANP32BQ92688 251 aaKnown RBP13.49□□□□□ -0.25
TRIM40-208ENST00000489892 ALG1Q9BT22 464 aa13.49□□□□□ -0.25
TRIM40-208ENST00000489892 BEGAINQ9BUH8 593 aa13.49□□□□□ -0.25
TRIM40-208ENST00000489892 SPZ1Q9BXG8 430 aa13.49□□□□□ -0.25
TRIM40-208ENST00000489892 DDX49Q9Y6V7 483 aaKnown RBP13.49□□□□□ -0.25
TRIM40-208ENST00000489892 PALM3A6NDB9 673 aaPredicted RBP13.48□□□□□ -0.25
TRIM40-208ENST00000489892 FAM196BA6NMK8 535 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 hCG_1984214I3L0E3 225 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 GDF11O95390 407 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 F13A1P00488 732 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 SNHG28P0DPA3 235 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 EEF2P13639 858 aaKnown RBP13.48□□□□□ -0.25
TRIM40-208ENST00000489892 ECE1P42892 770 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 TRAF1Q13077 416 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 SEPT2Q15019 361 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 ZNF713Q8N859 430 aaPredicted RBP13.48□□□□□ -0.25
TRIM40-208ENST00000489892 FBXO18Q8NFZ0 1043 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 CCDC12Q8WUD4 166 aaPredicted RBP13.48□□□□□ -0.25
TRIM40-208ENST00000489892 GMCL1Q96IK5 515 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 AS3MTQ9HBK9 375 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 BRMS1Q9HCU9 246 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 PICK1Q9NRD5 415 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 SEC63Q9UGP8 760 aaKnown RBP13.48□□□□□ -0.25
TRIM40-208ENST00000489892 MTMR6Q9Y217 621 aa13.48□□□□□ -0.25
TRIM40-208ENST00000489892 MYH4Q9Y623 1939 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 KLRF2D3W0D1 207 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 PPP1R12BO60237 982 aaPredicted RBP13.47□□□□□ -0.25
TRIM40-208ENST00000489892 PDHBP11177 359 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 SLC1A4P43007 532 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 HIRAP54198 1017 aaPredicted RBP13.47□□□□□ -0.25
TRIM40-208ENST00000489892 ATL3Q6DD88 541 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 MIGA2Q7L4E1 593 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 KRT26Q7Z3Y9 468 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 BRAPQ7Z569 592 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 LRRC47Q8N1G4 583 aaKnown RBP13.47□□□□□ -0.25
TRIM40-208ENST00000489892 CCDC148Q8NFR7 591 aa13.47□□□□□ -0.25
TRIM40-208ENST00000489892 RRP36Q96EU6 259 aaKnown RBP13.47□□□□□ -0.25
TRIM40-208ENST00000489892 THSD7BQ9C0I4 1608 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 CNTNAP5Q8WYK1 1306 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 FDPSP14324 419 aaKnown RBP13.46□□□□□ -0.25
TRIM40-208ENST00000489892 CALML3P27482 149 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 ZNF543Q08ER8 600 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 CCDC173Q0VFZ6 552 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 GNL2Q13823 731 aaKnown RBP13.46□□□□□ -0.25
TRIM40-208ENST00000489892 CCDC96Q2M329 555 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 GALNT17Q6IS24 598 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 CDC37L1Q7L3B6 337 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 NBPF11Q86T75 865 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 LPAR1Q92633 364 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 PHKBQ93100 1093 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 SYAP1Q96A49 352 aaPredicted RBP13.46□□□□□ -0.25
TRIM40-208ENST00000489892 CAPNS2Q96L46 248 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 GZF1Q9H116 711 aaPredicted RBP13.46□□□□□ -0.25
TRIM40-208ENST00000489892 SH3GLB2Q9NR46 395 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 MAD2L2Q9UI95 211 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 ZNF112Q9UJU3 913 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 TMX2Q9Y320 296 aa13.46□□□□□ -0.25
TRIM40-208ENST00000489892 ASTN2O75129 1339 aaPredicted RBP13.45□□□□□ -0.26
TRIM40-208ENST00000489892 USP17L5A8MUK1 530 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 PHF20L1A8MW92 1017 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 TRAF5O00463 557 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 PLEKHA8P1O95397 391 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 SCG2P13521 617 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 IREB2P48200 963 aaKnown RBP13.45□□□□□ -0.26
TRIM40-208ENST00000489892 USP14P54578 494 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 FUT2Q10981 343 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 NOL9Q5SY16 702 aaKnown RBP13.45□□□□□ -0.26
TRIM40-208ENST00000489892 NBPF12Q5TAG4 269 aaPredicted RBP13.45□□□□□ -0.26
TRIM40-208ENST00000489892 SLFN13Q68D06 897 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 MCTP1Q6DN14 999 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 SCYL3Q8IZE3 742 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 FEZ1Q99689 392 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 LMBRD1Q9NUN5 540 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 ZDHHC9Q9Y397 364 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 V9GY48 417 aaPredicted RBP13.45□□□□□ -0.26
TRIM40-208ENST00000489892 MYH6P13533 1939 aa13.45□□□□□ -0.26
TRIM40-208ENST00000489892 UNCXA6NJT0 531 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 GUCY1A2P33402 732 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 KRT85P78386 507 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 PKP1Q13835 747 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 PFKFB3Q16875 520 aaPredicted RBP13.44□□□□□ -0.26
TRIM40-208ENST00000489892 CYP4F22Q6NT55 531 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 TEX2Q8IWB9 1127 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 SRBD1Q8N5C6 995 aaKnown RBP13.44□□□□□ -0.26
TRIM40-208ENST00000489892 ZNF396Q96N95 335 aaPredicted RBP13.44□□□□□ -0.26
TRIM40-208ENST00000489892 WRNIP1Q96S55 665 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 CFAP45Q9UL16 551 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 PNMA2Q9UL42 364 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 CSADQ9Y600 493 aa13.44□□□□□ -0.26
TRIM40-208ENST00000489892 F5H6K3 240 aa13.43□□□□□ -0.26
TRIM40-208ENST00000489892 FMR1Q06787 632 aaKnown RBP eCLIP13.43□□□□□ -0.26
TRIM40-208ENST00000489892 KLRC3Q07444 240 aa13.43□□□□□ -0.26
TRIM40-208ENST00000489892 DOCK1Q14185 1865 aa13.43□□□□□ -0.26
TRIM40-208ENST00000489892 KRT40Q6A162 431 aa13.43□□□□□ -0.26
TRIM40-208ENST00000489892 PPP1R18Q6NYC8 613 aa13.43□□□□□ -0.26
TRIM40-208ENST00000489892 USP17L2Q6R6M4 530 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms