RNA–Protein interactions for RNA: ENST00000489614.5

NOD1-208, Transcript of nucleotide binding oligomerization domain containing 1, human

TSL 2

Gene NOD1, Length 3,098 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NOD1-208	ENST00000489614	SENP2	Q9HC62	589 aa		11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	SCN4A	P35499	1836 aa		11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	TBC1D8	O95759	1140 aa		11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	PLCG2	P16885	1265 aa		11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	LIG3	P49916	1009 aa		11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	FBXW10	Q5XX13	1052 aa		11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	C16orf86	Q6ZW13	317 aa		11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	DDX4	Q9NQI0	724 aa	Known RBP	11.17	□□□□□ -0.62
NOD1-208	ENST00000489614	CYP2D7	A0A087X1C5	515 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	IGKV6D-41	A0A0C4DH26	115 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	PSD	A5PKW4	1024 aa	Predicted RBP	11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	BAG3	O95817	575 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	CYP2D6	P10635	497 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	ZNF75D	P51815	510 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	ZRSR1	Q15695	479 aa	Known RBP	11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	CDC42EP5	Q6NZY7	148 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	FAM200A	Q8TCP9	573 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614		B4E1Z4	1266 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	KIF2A	O00139	706 aa	Predicted RBP	11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	FZD9	O00144	591 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	CRK	P46108	304 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	LRRC8A	Q8IWT6	810 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	JMY	Q8N9B5	988 aa		11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	NSUN7	Q8NE18	718 aa	Known RBP	11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.16	□□□□□ -0.62
NOD1-208	ENST00000489614	USP17L12	C9JPN9	530 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	USP17L21	D6R901	530 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614		H3BQF6	201 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	CAND2	O75155	1236 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	UBE2H	P62256	183 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	NTRK3	Q16288	839 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	BRF1	Q92994	677 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	EHD4	Q9H223	541 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	RNF41	Q9H4P4	317 aa	Predicted RBP	11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	IRAK4	Q9NWZ3	460 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	ORC3	Q9UBD5	711 aa	Predicted RBP	11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	ANGEL1	Q9UNK9	670 aa	Known RBP	11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	CNTNAP1	P78357	1384 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	PPIP5K2	O43314	1243 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	USP17L8	P0C7I0	530 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	INHBE	P58166	350 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	APOBR	Q0VD83	1088 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	NBPF9	Q3BBW0	867 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	ARMC3	Q5W041	872 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	RCSD1	Q6JBY9	416 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	GBP6	Q6ZN66	633 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	TADA2B	Q86TJ2	420 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	KAT2B	Q92831	832 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	LARP6	Q9BRS8	491 aa	Known RBP	11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	ZNRF3	Q9ULT6	936 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	TTF2	Q9UNY4	1162 aa	Known RBP	11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	PCDHAC2	Q9Y5I4	1007 aa		11.15	□□□□□ -0.62
NOD1-208	ENST00000489614	PHACTR2	O75167	634 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	HNRNPH1	P31943	449 aa	Known RBP	11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	PLCD1	P51178	756 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	ZNF280A	P59817	542 aa	Predicted RBP	11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	SNW1	Q13573	536 aa	Known RBP	11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	ANO6	Q4KMQ2	910 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	MFSD6	Q6ZSS7	791 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	AGBL3	Q8NEM8	1001 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	LRRC2	Q9BYS8	371 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	TMX4	Q9H1E5	349 aa	Predicted RBP	11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	CBX8	Q9HC52	389 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	FAM198A	Q9UFP1	575 aa		11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	11.15	□□□□□ -0.63
NOD1-208	ENST00000489614	PTPRF	P10586	1907 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	CLSTN1	O94985	981 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	FDPS	P14324	419 aa	Known RBP	11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	PSMD14	O00487	310 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	MCM6	Q14566	821 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	CPLX2	Q6PUV4	134 aa	Known RBP	11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	SH3BP5L	Q7L8J4	393 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	CHST3	Q7LGC8	479 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	HOMER1	Q86YM7	354 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	CCDC83	Q8IWF9	413 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	CCAR2	Q8N163	923 aa	Known RBP	11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	NECAB1	Q8N987	351 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	TEKT1	Q969V4	418 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	MIEF2	Q96C03	454 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	IL17RB	Q9NRM6	502 aa		11.14	□□□□□ -0.63
NOD1-208	ENST00000489614	RLF	Q13129	1914 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	FRMD3	A2A2Y4	597 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	APOA5	Q6Q788	366 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	NBPF11	Q86T75	865 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	IQUB	Q8NA54	791 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	TGFBRAP1	Q8WUH2	860 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	FAXDC2	Q96IV6	333 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	MRVI1	Q9Y6F6	885 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	ERLIN2	O94905	339 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	RASA1	P20936	1047 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	ATP2B2	Q01814	1243 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	TYRO3	Q06418	890 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	FUT2	Q10981	343 aa		11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	ENAH	Q8N8S7	591 aa	Predicted RBP	11.13	□□□□□ -0.63
NOD1-208	ENST00000489614	TAOK3	Q9H2K8	898 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms