RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 HPS5Q9UPZ3 1129 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 SLC10A3P09131 477 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 CETPP11597 493 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 BMP3P12645 472 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 GJA5P36382 358 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 C1QTNF8P60827 252 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 ZNF543Q08ER8 600 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 ME3Q16798 604 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 CCDC96Q2M329 555 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 CPLX2Q6PUV4 134 aaKnown RBP16.18■□□□□ 0.18
C9orf3-221ENST00000489562 TMX3Q96JJ7 454 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 LZTS2Q9BRK4 669 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 LARP6Q9BRS8 491 aaKnown RBP16.18■□□□□ 0.18
C9orf3-221ENST00000489562 MYL10Q9BUA6 226 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 EMILIN3Q9NT22 766 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 MTMR7Q9Y216 660 aa16.18■□□□□ 0.18
C9orf3-221ENST00000489562 PALM3A6NDB9 673 aaPredicted RBP16.17■□□□□ 0.18
C9orf3-221ENST00000489562 RASSF10A6NK89 507 aa16.17■□□□□ 0.18
C9orf3-221ENST00000489562 VCAM1P19320 739 aa16.17■□□□□ 0.18
C9orf3-221ENST00000489562 SPICE1Q8N0Z3 855 aa16.17■□□□□ 0.18
C9orf3-221ENST00000489562 GTF3C6Q969F1 213 aa16.17■□□□□ 0.18
C9orf3-221ENST00000489562 RBM19Q9Y4C8 960 aaKnown RBP16.17■□□□□ 0.18
C9orf3-221ENST00000489562 BAZ2BQ9UIF8 2168 aaKnown RBP16.16■□□□□ 0.18
C9orf3-221ENST00000489562 RLFQ13129 1914 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 MANSC4A6NHS7 340 aaPredicted RBP16.16■□□□□ 0.18
C9orf3-221ENST00000489562 CPLX1O14810 134 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 PLA2G6O60733 806 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 CDKL5O76039 1030 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 LARGE1O95461 756 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 RXRAP19793 462 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 SMARCA1P28370 1054 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 STK3Q13188 491 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 PABPC4Q13310 644 aaKnown RBP eCLIP16.16■□□□□ 0.18
C9orf3-221ENST00000489562 DEFB115Q30KQ5 88 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 FAM160B2Q86V87 743 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 CHURC1Q8WUH1 139 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 MAD2L2Q9UI95 211 aa16.16■□□□□ 0.18
C9orf3-221ENST00000489562 KLRF2D3W0D1 207 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 CCT2P78371 535 aaKnown RBP16.15■□□□□ 0.18
C9orf3-221ENST00000489562 SCRN1Q12765 414 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 KIAA1755Q5JYT7 1200 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 FAM83BQ5T0W9 1011 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 BTNL9Q6UXG8 535 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 GADL1Q6ZQY3 521 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 TMTC3Q6ZXV5 915 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 RAB11FIP4Q86YS3 637 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 CCDC144CPQ8IYA2 1237 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 MS4A4AQ96JQ5 239 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 FEM1BQ9UK73 627 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 ISY1Q9ULR0 285 aaKnown RBP16.15■□□□□ 0.18
C9orf3-221ENST00000489562 AGTPBP1Q9UPW5 1226 aa16.15■□□□□ 0.18
C9orf3-221ENST00000489562 CCL15-CCL14A0A0B4J2E2 113 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L15C9J2P7 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L13C9JLJ4 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L11C9JVI0 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L18D6R9N7 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L22D6RA61 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L17D6RBQ6 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L19D6RCP7 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L20D6RJB6 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 CDC27P30260 824 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 HOXA7P31268 230 aaPredicted RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 STAT2P52630 851 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 INHBEP58166 350 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 USP17L24Q0WX57 530 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 CUL4AQ13619 759 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 CCL15Q16663 113 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 PAXIP1Q6ZW49 1069 aaPredicted RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 KCTD1Q719H9 257 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 LLPHQ9BRT6 129 aaKnown RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 SPZ1Q9BXG8 430 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 TANGO6Q9C0B7 1094 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 RPAP3Q9H6T3 665 aaPredicted RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 NCOA5Q9HCD5 579 aaKnown RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 FAM217BQ9NTX9 383 aaPredicted RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 RBM27Q9P2N5 1060 aaKnown RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 SLC45A1Q9Y2W3 748 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 FRMPD2Q68DX3 1309 aaPredicted RBP16.14■□□□□ 0.17
C9orf3-221ENST00000489562 MYPNQ86TC9 1320 aa16.14■□□□□ 0.17
C9orf3-221ENST00000489562 COL11A1P12107 1806 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 TESPA1A2RU30 521 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 FAM155AB1AL88 458 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 TMEM232C9JQI7 657 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 GOLGA8HP0CJ92 632 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 FDX1P10109 184 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 IFNAR1P17181 557 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 SREBF2Q12772 1141 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 MKRN3Q13064 507 aaKnown RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 IKQ13123 557 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 NOGQ13253 232 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 MOGSQ13724 837 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 RASGRP2Q7LDG7 609 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 CCDC83Q8IWF9 413 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 REM2Q8IYK8 340 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 STAG2Q8N3U4 1231 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 NECAB1Q8N987 351 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 NUP88Q99567 741 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 ZCCHC17Q9NP64 241 aaKnown RBP16.13■□□□□ 0.17
C9orf3-221ENST00000489562 GPCPD1Q9NPB8 672 aa16.13■□□□□ 0.17
C9orf3-221ENST00000489562 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms