RNA–Protein interactions for RNA: ENST00000489030.1

USP11-210, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 340 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-210ENST00000489030 RAB11FIP3O75154 756 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 PGK2P07205 417 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 TLE2Q04725 743 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 MAP3K12Q12852 859 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 PLS1Q14651 629 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 NCAPG2Q86XI2 1143 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 ERC1Q8IUD2 1116 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 MAML3Q96JK9 1138 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 PRKAG2Q9UGJ0 569 aa13.84□□□□□ -0.19
USP11-210ENST00000489030 NAV1Q8NEY1 1877 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 PGK1P00558 417 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 TMEM132BQ14DG7 1078 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 USP38Q8NB14 1042 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 ARRDC4Q8NCT1 418 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 SHCBP1Q8NEM2 672 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 DCP1AQ9NPI6 582 aaPredicted RBP13.83□□□□□ -0.2
USP11-210ENST00000489030 FBXO28Q9NVF7 368 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 HOXC10Q9NYD6 342 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 ZBTB47Q9UFB7 747 aaPredicted RBP13.83□□□□□ -0.2
USP11-210ENST00000489030 ZNF532Q9HCE3 1301 aa13.83□□□□□ -0.2
USP11-210ENST00000489030 IGSF3O75054 1194 aa13.82□□□□□ -0.2
USP11-210ENST00000489030 FLOT1O75955 427 aa13.82□□□□□ -0.2
USP11-210ENST00000489030 IRX5P78411 483 aaPredicted RBP13.82□□□□□ -0.2
USP11-210ENST00000489030 SLC9C2Q5TAH2 1124 aa13.82□□□□□ -0.2
USP11-210ENST00000489030 CENPQQ7L2Z9 268 aaPredicted RBP13.82□□□□□ -0.2
USP11-210ENST00000489030 ARMT1Q9H993 441 aa13.82□□□□□ -0.2
USP11-210ENST00000489030 PHF24Q9UPV7 400 aa13.82□□□□□ -0.2
USP11-210ENST00000489030 SPTBN5Q9NRC6 3674 aaKnown RBP13.82□□□□□ -0.2
USP11-210ENST00000489030 GOLIM4O00461 696 aa13.81□□□□□ -0.2
USP11-210ENST00000489030 STRNO43815 780 aa13.81□□□□□ -0.2
USP11-210ENST00000489030 SMAD3P84022 425 aaKnown RBP13.81□□□□□ -0.2
USP11-210ENST00000489030 B4GALNT3Q6L9W6 998 aa13.81□□□□□ -0.2
USP11-210ENST00000489030 SMC5Q8IY18 1101 aa13.81□□□□□ -0.2
USP11-210ENST00000489030 KIF1BPQ96EK5 621 aa13.81□□□□□ -0.2
USP11-210ENST00000489030 CRNKL1Q9BZJ0 848 aaKnown RBP13.81□□□□□ -0.2
USP11-210ENST00000489030 BCL11AQ9H165 835 aa13.81□□□□□ -0.2
USP11-210ENST00000489030 TMX2Q9Y320 296 aa13.81□□□□□ -0.2
USP11-210ENST00000489030 APBB1O00213 710 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 ICA1Q05084 483 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 GRIN2CQ14957 1233 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 TMEM179Q6ZVK1 233 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 CERS3Q8IU89 383 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 DNAJC2Q99543 621 aaKnown RBP13.8□□□□□ -0.2
USP11-210ENST00000489030 LRRCC1Q9C099 1032 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 MROH8Q9H579 483 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 VCPKMTQ9H867 229 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 XPNPEP3Q9NQH7 507 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 PRDM6Q9NQX0 595 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 ADAMTS5Q9UNA0 930 aa13.8□□□□□ -0.2
USP11-210ENST00000489030 PARP14Q460N5 1801 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 MYADML2A6NDP7 307 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 PQBP1O60828 265 aaKnown RBP13.79□□□□□ -0.2
USP11-210ENST00000489030 MBD4O95243 580 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 CLTBP09497 229 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 ZNF865P0CJ78 1059 aaPredicted RBP13.79□□□□□ -0.2
USP11-210ENST00000489030 FOSL2P15408 326 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 ZNF792Q3KQV3 632 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 ANKRD45Q5TZF3 282 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 C1orf53Q5VUE5 145 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 ABRAQ8N0Z2 381 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 REPS2Q8NFH8 660 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 RHPN1Q8TCX5 695 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 RNPC3Q96LT9 517 aaKnown RBP13.79□□□□□ -0.2
USP11-210ENST00000489030 MMP19Q99542 508 aa13.79□□□□□ -0.2
USP11-210ENST00000489030 ZNFX1Q9P2E3 1918 aaKnown RBP13.78□□□□□ -0.2
USP11-210ENST00000489030 A0A1W2PQ45 241 aaPredicted RBP13.78□□□□□ -0.2
USP11-210ENST00000489030 A0A1W2PQY0 241 aa13.78□□□□□ -0.2
USP11-210ENST00000489030 KIAA0355O15063 1070 aa13.78□□□□□ -0.2
USP11-210ENST00000489030 ADAMTS4O75173 837 aa13.78□□□□□ -0.2
USP11-210ENST00000489030 FCER1AP12319 257 aa13.78□□□□□ -0.2
USP11-210ENST00000489030 EEF2P13639 858 aaKnown RBP13.78□□□□□ -0.2
USP11-210ENST00000489030 CDK8P49336 464 aa13.78□□□□□ -0.2
USP11-210ENST00000489030 MB21D1Q8N884 522 aa13.78□□□□□ -0.2
USP11-210ENST00000489030 NUP88Q99567 741 aaPredicted RBP13.78□□□□□ -0.2
USP11-210ENST00000489030 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.78□□□□□ -0.2
USP11-210ENST00000489030 VWA5AO00534 786 aa13.77□□□□□ -0.21
USP11-210ENST00000489030 ADCY6O43306 1168 aa13.77□□□□□ -0.21
USP11-210ENST00000489030 RARBP10826 455 aa13.77□□□□□ -0.21
USP11-210ENST00000489030 COL11A1P12107 1806 aaPredicted RBP13.77□□□□□ -0.21
USP11-210ENST00000489030 FAAP100Q0VG06 881 aa13.77□□□□□ -0.21
USP11-210ENST00000489030 FAM83BQ5T0W9 1011 aa13.77□□□□□ -0.21
USP11-210ENST00000489030 RIOX2Q8IUF8 465 aa13.77□□□□□ -0.21
USP11-210ENST00000489030 CLASRPQ8N2M8 674 aaKnown RBP13.77□□□□□ -0.21
USP11-210ENST00000489030 TINF2Q9BSI4 451 aa13.77□□□□□ -0.21
USP11-210ENST00000489030 BAZ2AQ9UIF9 1905 aaKnown RBP13.77□□□□□ -0.21
USP11-210ENST00000489030 ZNF214Q9UL59 606 aaPredicted RBP13.77□□□□□ -0.21
USP11-210ENST00000489030 GRXCR1A8MXD5 290 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 USP17L12C9JPN9 530 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 USP17L21D6R901 530 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 WDR46O15213 610 aaKnown RBP13.76□□□□□ -0.21
USP11-210ENST00000489030 SNAI1O95863 264 aaPredicted RBP13.76□□□□□ -0.21
USP11-210ENST00000489030 ADD2P35612 726 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 PBX2P40425 430 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 NUCB1Q02818 461 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 C12orf60Q5U649 245 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 CCSAPQ6IQ19 270 aaPredicted RBP13.76□□□□□ -0.21
USP11-210ENST00000489030 C16orf59Q7L2K0 433 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 BOLA2Q9H3K6 86 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 ARHGEF10LQ9HCE6 1279 aa13.76□□□□□ -0.21
USP11-210ENST00000489030 SWAP70Q9UH65 585 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms