RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GMIPQ9P107 970 aa5.7□□□□□ -1.5
VPS50-216ENST00000484954 SMG5Q9UPR3 1016 aaKnown RBP5.7□□□□□ -1.5
VPS50-216ENST00000484954 ETV2O00321 342 aaPredicted RBP5.69□□□□□ -1.5
VPS50-216ENST00000484954 GBP1P32455 592 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 MCM4P33991 863 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 SNW1Q13573 536 aaKnown RBP5.69□□□□□ -1.5
VPS50-216ENST00000484954 USP48Q86UV5 1035 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 NKD1Q969G9 470 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 ASPNQ9BXN1 380 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 IRF2BPLQ9H1B7 796 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 EPB41L4BQ9H329 900 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 CNNM2Q9H8M5 875 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 DUSP13Q9UII6 198 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 PCDHA11Q9Y5I1 949 aa5.69□□□□□ -1.5
VPS50-216ENST00000484954 GDNFP39905 211 aa5.68□□□□□ -1.5
VPS50-216ENST00000484954 HK2P52789 917 aa5.68□□□□□ -1.5
VPS50-216ENST00000484954 EGR3Q06889 387 aa5.68□□□□□ -1.5
VPS50-216ENST00000484954 CDCP2Q5VXM1 449 aa5.68□□□□□ -1.5
VPS50-216ENST00000484954 TTC6Q86TZ1 520 aa5.68□□□□□ -1.5
VPS50-216ENST00000484954 REXO1Q8N1G1 1221 aaKnown RBP5.68□□□□□ -1.5
VPS50-216ENST00000484954 ZNF512BQ96KM6 892 aaPredicted RBP5.68□□□□□ -1.5
VPS50-216ENST00000484954 GPATCH2Q9NW75 528 aa5.68□□□□□ -1.5
VPS50-216ENST00000484954 KCNH3Q9ULD8 1083 aa5.68□□□□□ -1.5
VPS50-216ENST00000484954 FAM86C2PA6NEL3 165 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 UNCXA6NJT0 531 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 FOXD2O60548 495 aaPredicted RBP5.67□□□□□ -1.5
VPS50-216ENST00000484954 TRHRP34981 398 aaPredicted RBP5.67□□□□□ -1.5
VPS50-216ENST00000484954 NLRC3Q7RTR2 1065 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 TMC3Q7Z5M5 1100 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 TRIT1Q9H3H1 467 aaKnown RBP5.67□□□□□ -1.5
VPS50-216ENST00000484954 SP110Q9HB58 689 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 PARD6AQ9NPB6 346 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 KIAA1522Q9P206 1035 aaPredicted RBP5.67□□□□□ -1.5
VPS50-216ENST00000484954 EBF1Q9UH73 591 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 TMEM59LQ9UK28 342 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 MINPP1Q9UNW1 487 aa5.67□□□□□ -1.5
VPS50-216ENST00000484954 ACRP10323 421 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 NME1P15531 152 aaKnown RBP5.66□□□□□ -1.5
VPS50-216ENST00000484954 BMP7P18075 431 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 LTKP29376 864 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 ZNF165P49910 485 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 LINC00310P59036 64 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 MLECQ14165 292 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 NBPF12Q5TAG4 269 aaPredicted RBP5.66□□□□□ -1.5
VPS50-216ENST00000484954 METTL16Q86W50 562 aaKnown RBP5.66□□□□□ -1.5
VPS50-216ENST00000484954 TMEM192Q8IY95 271 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 KCNN1Q92952 543 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 RNF34Q969K3 372 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 SLC9A7Q96T83 725 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 BCL11AQ9H165 835 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 ZCCHC4Q9H5U6 513 aa5.66□□□□□ -1.5
VPS50-216ENST00000484954 METTL5Q9NRN9 209 aaKnown RBP5.66□□□□□ -1.5
VPS50-216ENST00000484954 DDX41Q9UJV9 622 aaKnown RBP5.66□□□□□ -1.5
VPS50-216ENST00000484954 A0A0G2JLL6 359 aaPredicted RBP5.65□□□□□ -1.5
VPS50-216ENST00000484954 MEIS3P2A8K0S8 358 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 ZGLP1P0C6A0 271 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 MED14OSP0DP75 135 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 TEKQ02763 1124 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 NMIQ13287 307 aaPredicted RBP5.65□□□□□ -1.5
VPS50-216ENST00000484954 NBPF9Q3BBW0 867 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 TIGD5Q53EQ6 642 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 C9orf131Q5VYM1 1079 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 HDAC8Q9BY41 377 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 C19orf44Q9H6X5 657 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 ZNRF3Q9ULT6 936 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 PPT2Q9UMR5 302 aa5.65□□□□□ -1.5
VPS50-216ENST00000484954 TNFRSF10CO14798 259 aa5.64□□□□□ -1.51
VPS50-216ENST00000484954 VAMP1P23763 118 aa5.64□□□□□ -1.51
VPS50-216ENST00000484954 DBX2Q6ZNG2 339 aa5.64□□□□□ -1.51
VPS50-216ENST00000484954 MRRFQ96E11 262 aaKnown RBP5.64□□□□□ -1.51
VPS50-216ENST00000484954 SLC6A18Q96N87 628 aa5.64□□□□□ -1.51
VPS50-216ENST00000484954 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS50-216ENST00000484954 SCAMP3O14828 347 aaKnown RBP5.63□□□□□ -1.51
VPS50-216ENST00000484954 CLEC3AO75596 197 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 EFEMP2O95967 443 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 HPXP02790 462 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 GLDCP23378 1020 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 CHMP4BP1P59074 171 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 HDLBPQ00341 1268 aaKnown RBP5.63□□□□□ -1.51
VPS50-216ENST00000484954 CLEC16AQ2KHT3 1053 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 ZPBP2Q6X784 338 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 RUFY4Q6ZNE9 571 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 USHBP1Q8N6Y0 703 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 RGS22Q8NE09 1264 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 ABHD4Q8TB40 342 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 G6PC3Q9BUM1 346 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 FOXP3Q9BZS1 431 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 PRDM14Q9GZV8 571 aa5.63□□□□□ -1.51
VPS50-216ENST00000484954 C9IYK1 514 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 PRAMEF1O95521 474 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 GALK1P51570 392 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 RNF4P78317 190 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 PAK2Q13177 524 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 ZYXQ15942 572 aaKnown RBP5.62□□□□□ -1.51
VPS50-216ENST00000484954 CCDC81Q6ZN84 652 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 GGNQ86UU5 652 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 SYTL5Q8TDW5 730 aaPredicted RBP5.62□□□□□ -1.51
VPS50-216ENST00000484954 MYLIPQ8WY64 445 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 TCTN2Q96GX1 697 aa5.62□□□□□ -1.51
VPS50-216ENST00000484954 RNF32Q9H0A6 362 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms