RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 COPB1P53618 953 aaKnown RBP14.96□□□□□ -0.01
USP40-214ENST00000483519 SMYD4Q8IYR2 804 aaPredicted RBP14.96□□□□□ -0.01
USP40-214ENST00000483519 NAPBQ9H115 298 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 CHD4Q14839 1912 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 AKAP11Q9UKA4 1901 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 CDHR2Q9BYE9 1310 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 A0A087X0B3 334 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 SHOX2O60902 331 aaPredicted RBP14.96□□□□□ -0.01
USP40-214ENST00000483519 NPM3O75607 178 aaKnown RBP14.96□□□□□ -0.01
USP40-214ENST00000483519 XBP1P17861 261 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 METTL24Q5JXM2 366 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 SUGP1Q8IWZ8 645 aaKnown RBP14.96□□□□□ -0.01
USP40-214ENST00000483519 CRACR2BQ8N4Y2 399 aaPredicted RBP14.96□□□□□ -0.01
USP40-214ENST00000483519 SYMPKQ92797 1274 aaKnown RBP14.96□□□□□ -0.01
USP40-214ENST00000483519 EPSTI1Q96J88 318 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 PLEKHA4Q9H4M7 779 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 RWDD2AQ9UIY3 292 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 RIC1Q4ADV7 1423 aa14.96□□□□□ -0.01
USP40-214ENST00000483519 ERICH2A1L162 156 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 PDE6AP16499 860 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 RCAN1P53805 252 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 WTAPQ15007 396 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 FAM76AQ8TAV0 307 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 STRBPQ96SI9 672 aaKnown RBP14.95□□□□□ -0.02
USP40-214ENST00000483519 VPS16Q9H269 839 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 RNF216Q9NWF9 866 aaPredicted RBP14.95□□□□□ -0.02
USP40-214ENST00000483519 TIAM2Q8IVF5 1701 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 AKNAD1Q5T1N1 836 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 OXER1Q8TDS5 423 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 PRDM16Q9HAZ2 1276 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 PIH1D3Q9NQM4 214 aaKnown RBP14.95□□□□□ -0.02
USP40-214ENST00000483519 KCPQ6ZWJ8 1503 aa14.95□□□□□ -0.02
USP40-214ENST00000483519 ANKRD65E5RJM6 399 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 CASP1P29466 404 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 PAK1Q13153 545 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 TSR1Q2NL82 804 aaKnown RBP14.94□□□□□ -0.02
USP40-214ENST00000483519 TCP11X2Q5H9J9 407 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 PAPD7Q5XG87 772 aaKnown RBP14.94□□□□□ -0.02
USP40-214ENST00000483519 IQCEQ6IPM2 695 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 MMS22LQ6ZRQ5 1243 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 MFSD6Q6ZSS7 791 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 TMTC2Q8N394 836 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 ISCA1Q9BUE6 129 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 KCNJ18B7U540 433 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 PATL2C9JE40 543 aaKnown RBP14.94□□□□□ -0.02
USP40-214ENST00000483519 CDC25AP30304 524 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 KCNJ12Q14500 433 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 FAM196AQ6ZSG2 479 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 MMS19Q96T76 1030 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 TAB2Q9NYJ8 693 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 ZC3H4Q9UPT8 1303 aaKnown RBP14.94□□□□□ -0.02
USP40-214ENST00000483519 BRWD3Q6RI45 1802 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 A1BGP04217 495 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 GGCXP38435 758 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 CTDSPL2Q05D32 466 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 RRAGBQ5VZM2 374 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 CCDC70Q6NSX1 233 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 IFNL3Q8IZI9 196 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 MICALL1Q8N3F8 863 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 CCDC82Q8N4S0 544 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 OR8K1Q8NGG5 319 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 PYM1Q9BRP8 204 aaKnown RBP14.94□□□□□ -0.02
USP40-214ENST00000483519 MTA3Q9BTC8 594 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 PLA2G12BQ9BX93 195 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 INCENPQ9NQS7 918 aa14.94□□□□□ -0.02
USP40-214ENST00000483519 REXO2Q9Y3B8 237 aaKnown RBP14.94□□□□□ -0.02
USP40-214ENST00000483519 GOLGA6CA6NDK9 693 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 RNF225M0QZC1 329 aaPredicted RBP14.93□□□□□ -0.02
USP40-214ENST00000483519 ENC1O14682 589 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 ATP1A1P05023 1023 aaKnown RBP14.93□□□□□ -0.02
USP40-214ENST00000483519 GOLGA6DP0CG33 693 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 KRT83P78385 493 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 CCDC122Q5T0U0 273 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 CAGE1Q8TC20 777 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 CCDC85AQ96PX6 553 aaPredicted RBP14.93□□□□□ -0.02
USP40-214ENST00000483519 CHP1Q99653 195 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 SELENOOQ9BVL4 669 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 GOLGA6AQ9NYA3 693 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 TRIM10Q9UDY6 481 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 IQSEC3Q9UPP2 1182 aaPredicted RBP14.93□□□□□ -0.02
USP40-214ENST00000483519 TCRBV5S4A2TA0A5A2 114 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 EBAG9O00559 213 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 KRT86O43790 486 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 KRT2P35908 639 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 UBXN1Q04323 297 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 ZNF662Q6ZS27 426 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 MARCH10Q8NA82 808 aaPredicted RBP14.93□□□□□ -0.02
USP40-214ENST00000483519 DRC1Q96MC2 740 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 RNF26Q9BY78 433 aaPredicted RBP14.93□□□□□ -0.02
USP40-214ENST00000483519 HDAC6Q9UBN7 1215 aa14.93□□□□□ -0.02
USP40-214ENST00000483519 GOLGA6BA6NDN3 693 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 PCCAP05165 728 aaPredicted RBP14.92□□□□□ -0.02
USP40-214ENST00000483519 CSF1RP07333 972 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 GBP6Q6ZN66 633 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 FANCBQ8NB91 859 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 JAKMIP2Q96AA8 810 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 EPB41L4AQ9HCS5 686 aaPredicted RBP14.92□□□□□ -0.02
USP40-214ENST00000483519 RMND1Q9NWS8 449 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 LUC7L2Q9Y383 392 aaKnown RBP14.92□□□□□ -0.02
USP40-214ENST00000483519 BCL9O00512 1426 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms