RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 GABPAQ06546 454 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 GRM4Q14833 912 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 RILPL1Q5EBL4 403 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 GRAMD1CQ8IYS0 662 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 NEDD1Q8NHV4 660 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 DNAJC18Q9H819 358 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.54■□□□□ 0.24
CHD3-211ENST00000481999 HPSEQ9Y251 543 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 DDTLA6NHG4 134 aaPredicted RBP16.54■□□□□ 0.24
CHD3-211ENST00000481999 KLRF2D3W0D1 207 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 KIF5BP33176 963 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 RESP18Q5W5W9 173 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 WWC2Q6AWC2 1192 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 HEATR3Q7Z4Q2 680 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 KRI1Q8N9T8 703 aaKnown RBP16.54■□□□□ 0.24
CHD3-211ENST00000481999 RGS22Q8NE09 1264 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 MRFAP1L1Q96HT8 127 aa16.54■□□□□ 0.24
CHD3-211ENST00000481999 OSBPL5Q9H0X9 879 aaPredicted RBP16.54■□□□□ 0.24
CHD3-211ENST00000481999 BECN2A8MW95 431 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 PPIP5K2O43314 1243 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 XBP1P17861 261 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 CEP57L1Q8IYX8 460 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 CSRNP2Q9H175 543 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 KIAA1468Q9P260 1216 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 NRBP1Q9UHY1 535 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 SERPINB13Q9UIV8 391 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 ATP2B2Q01814 1243 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 ANKS1AQ92625 1134 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 CNKSR1Q969H4 720 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 EPSTI1Q96J88 318 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 NAT10Q9H0A0 1025 aaKnown RBP16.53■□□□□ 0.24
CHD3-211ENST00000481999 ZNF277Q9NRM2 450 aaPredicted RBP16.53■□□□□ 0.24
CHD3-211ENST00000481999 TCP11L1Q9NUJ3 509 aa16.53■□□□□ 0.24
CHD3-211ENST00000481999 MPHOSPH10O00566 681 aaKnown RBP16.52■□□□□ 0.24
CHD3-211ENST00000481999 RAD17O75943 681 aa16.52■□□□□ 0.24
CHD3-211ENST00000481999 SHMT1P34896 483 aa16.52■□□□□ 0.24
CHD3-211ENST00000481999 LRMPQ12912 555 aa16.52■□□□□ 0.24
CHD3-211ENST00000481999 FOXP4Q8IVH2 680 aaPredicted RBP16.52■□□□□ 0.24
CHD3-211ENST00000481999 TDRD3Q9H7E2 651 aaKnown RBP16.52■□□□□ 0.24
CHD3-211ENST00000481999 KCNH3Q9ULD8 1083 aa16.52■□□□□ 0.24
CHD3-211ENST00000481999 SCAF8Q9UPN6 1271 aaKnown RBP16.52■□□□□ 0.24
CHD3-211ENST00000481999 ATF5Q9Y2D1 282 aaPredicted RBP16.52■□□□□ 0.24
CHD3-211ENST00000481999 A0A087X0B3 334 aa16.52■□□□□ 0.23
CHD3-211ENST00000481999 PALM3A6NDB9 673 aaPredicted RBP16.52■□□□□ 0.23
CHD3-211ENST00000481999 DPEP1P16444 411 aa16.52■□□□□ 0.23
CHD3-211ENST00000481999 STRIP1Q5VSL9 837 aa16.52■□□□□ 0.23
CHD3-211ENST00000481999 SH3BP5LQ7L8J4 393 aa16.52■□□□□ 0.23
CHD3-211ENST00000481999 METTL16Q86W50 562 aaKnown RBP16.52■□□□□ 0.23
CHD3-211ENST00000481999 FAM198AQ9UFP1 575 aa16.52■□□□□ 0.23
CHD3-211ENST00000481999 ZBTB12Q9Y330 459 aaPredicted RBP16.52■□□□□ 0.23
CHD3-211ENST00000481999 COL4A5P29400 1685 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 POLR2DO15514 142 aaKnown RBP16.51■□□□□ 0.23
CHD3-211ENST00000481999 RAD21O60216 631 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 KCNA3P22001 575 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 PTPREP23469 700 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 MCM7P33993 719 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 HHIPL2Q6UWX4 724 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 ZSCAN29Q8IWY8 852 aaPredicted RBP16.51■□□□□ 0.23
CHD3-211ENST00000481999 DHX40Q8IX18 779 aaKnown RBP16.51■□□□□ 0.23
CHD3-211ENST00000481999 JMYQ8N9B5 988 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 SLC16A10Q8TF71 515 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 TRIM75PA6NK02 468 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 NEMFO60524 1076 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 CASP1P29466 404 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 CDC25AP30304 524 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 CERS3Q8IU89 383 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 ZNF287Q9HBT7 754 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 MTMR4Q9NYA4 1195 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 SUGT1Q9Y2Z0 365 aa16.51■□□□□ 0.23
CHD3-211ENST00000481999 CUTAO60888 179 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 PRR29P0C7W0 189 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 AOPEPQ8N6M6 819 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 PRMT6Q96LA8 375 aaPredicted RBP16.5■□□□□ 0.23
CHD3-211ENST00000481999 ZDHHC15Q96MV8 337 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 MTFR1LQ9H019 292 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 MYH8P13535 1937 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 PTGDRQ13258 359 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 CACTINQ8WUQ7 758 aaKnown RBP16.5■□□□□ 0.23
CHD3-211ENST00000481999 PIGSQ96S52 555 aa16.5■□□□□ 0.23
CHD3-211ENST00000481999 PPP1R1BQ9UD71 204 aaPredicted RBP16.5■□□□□ 0.23
CHD3-211ENST00000481999 ZNF646O15015 1829 aaPredicted RBP16.5■□□□□ 0.23
CHD3-211ENST00000481999 VWA3AA6NCI4 1184 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 IGSF3O75054 1194 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 PARP1P09874 1014 aaKnown RBP16.49■□□□□ 0.23
CHD3-211ENST00000481999 PDHBP11177 359 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 CCDC144BQ3MJ40 725 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 GPCPD1Q9NPB8 672 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 ZRSR1Q15695 479 aaKnown RBP16.49■□□□□ 0.23
CHD3-211ENST00000481999 IL17AQ16552 155 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 TTC38Q5R3I4 469 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 TTBK2Q6IQ55 1244 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 CNNM3Q8NE01 707 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 SERTAD1Q9UHV2 236 aa16.49■□□□□ 0.23
CHD3-211ENST00000481999 PCNTO95613 3336 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 STXBP3O00186 592 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 RIOK3O14730 519 aaKnown RBP16.48■□□□□ 0.23
CHD3-211ENST00000481999 TOP1P11387 765 aaKnown RBP16.48■□□□□ 0.23
CHD3-211ENST00000481999 SLC16A2P36021 539 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 BLIDQ8IZY5 108 aa16.48■□□□□ 0.23
CHD3-211ENST00000481999 STAMQ92783 540 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms