RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 TMEM67Q5HYA8 995 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 GPAT2Q6NUI2 795 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 LBX2Q6XYB7 198 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 CATIPQ7Z7H3 387 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 SGMS1Q86VZ5 419 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 MB21D1Q8N884 522 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 ENAHQ8N8S7 591 aaPredicted RBP9.66□□□□□ -0.86
USP54-212ENST00000480210 PNMA1Q8ND90 353 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 IPO9Q96P70 1041 aaKnown RBP9.66□□□□□ -0.86
USP54-212ENST00000480210 PTPN18Q99952 460 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 AGXT2Q9BYV1 514 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 WBP1LQ9NX94 342 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 FEM1BQ9UK73 627 aa9.66□□□□□ -0.86
USP54-212ENST00000480210 RLFQ13129 1914 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 SH2B2O14492 632 aaPredicted RBP9.65□□□□□ -0.86
USP54-212ENST00000480210 NMT2O60551 498 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 DDAH1O94760 285 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 NDUFB10O96000 172 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 SNHG28P0DPA3 235 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 VCAM1P19320 739 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 SMARCA1P28370 1054 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 GNAQP50148 359 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 ANTXR2P58335 489 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 ARHGEF6Q15052 776 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 TAF1CQ15572 869 aaPredicted RBP9.65□□□□□ -0.86
USP54-212ENST00000480210 SHROOM1Q2M3G4 852 aaPredicted RBP9.65□□□□□ -0.86
USP54-212ENST00000480210 ASPRV1Q53RT3 343 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 CCDC84Q86UT8 332 aaPredicted RBP9.65□□□□□ -0.86
USP54-212ENST00000480210 PRPF38AQ8NAV1 312 aaKnown RBP9.65□□□□□ -0.86
USP54-212ENST00000480210 LZTS2Q9BRK4 669 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 ZKSCAN3Q9BRR0 538 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 RPAP3Q9H6T3 665 aaPredicted RBP9.65□□□□□ -0.86
USP54-212ENST00000480210 RNF186Q9NXI6 227 aa9.65□□□□□ -0.86
USP54-212ENST00000480210 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.65□□□□□ -0.86
USP54-212ENST00000480210 CCDC196A0A1B0GTZ2 297 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 IGF2BP3O00425 579 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP54-212ENST00000480210 TLR2O60603 784 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 PARP1P09874 1014 aaKnown RBP9.64□□□□□ -0.87
USP54-212ENST00000480210 PDHBP11177 359 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 DSG3P32926 999 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 KIF5BP33176 963 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 COPB2P35606 906 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 STAT2P52630 851 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 EVCP57679 992 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 TRAF1Q13077 416 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 ZYXQ15942 572 aaKnown RBP9.64□□□□□ -0.87
USP54-212ENST00000480210 BTNL9Q6UXG8 535 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 NFXL1Q6ZNB6 911 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 LRRC47Q8N1G4 583 aaKnown RBP9.64□□□□□ -0.87
USP54-212ENST00000480210 FAM43AQ8N2R8 423 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 ZIC5Q96T25 663 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 ASCC2Q9H1I8 757 aaPredicted RBP9.64□□□□□ -0.87
USP54-212ENST00000480210 LY9Q9HBG7 655 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 PDRG1Q9NUG6 133 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 RBM28Q9NW13 759 aaKnown RBP9.64□□□□□ -0.87
USP54-212ENST00000480210 SLC12A7Q9Y666 1083 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 TAF6LQ9Y6J9 622 aa9.64□□□□□ -0.87
USP54-212ENST00000480210 ZNFX1Q9P2E3 1918 aaKnown RBP9.64□□□□□ -0.87
USP54-212ENST00000480210 RAD21O60216 631 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 FLOT1O75955 427 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 OAZ1P54368 228 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 CCNA1P78396 465 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 ZNF543Q08ER8 600 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 TROAPQ12815 778 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 RABEP1Q15276 862 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 TREML2Q5T2D2 321 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 Q6ZUG5 572 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 CHST3Q7LGC8 479 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 CLEC10AQ8IUN9 316 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 ZNF654Q8IZM8 581 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 CTCFLQ8NI51 663 aaPredicted RBP9.63□□□□□ -0.87
USP54-212ENST00000480210 SMCR8Q8TEV9 937 aaPredicted RBP9.63□□□□□ -0.87
USP54-212ENST00000480210 ZNF274Q96GC6 653 aaPredicted RBP9.63□□□□□ -0.87
USP54-212ENST00000480210 TBC1D32Q96NH3 1257 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 SLF1Q9BQI6 1058 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 TANGO6Q9C0B7 1094 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 MAF1Q9H063 256 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 PPP1R9AQ9ULJ8 1098 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 ADAMTS5Q9UNA0 930 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 RABGAP1Q9Y3P9 1069 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 CTDP1Q9Y5B0 961 aaPredicted RBP9.63□□□□□ -0.87
USP54-212ENST00000480210 MGAMO43451 1857 aa9.63□□□□□ -0.87
USP54-212ENST00000480210 COL11A1P12107 1806 aaPredicted RBP9.63□□□□□ -0.87
USP54-212ENST00000480210 BAZ2BQ9UIF8 2168 aaKnown RBP9.63□□□□□ -0.87
USP54-212ENST00000480210 DOCK3Q8IZD9 2030 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 PALM3A6NDB9 673 aaPredicted RBP9.62□□□□□ -0.87
USP54-212ENST00000480210 TMEM232C9JQI7 657 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 ZBTB43O43298 467 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 ZBED4O75132 1171 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 TRPA1O75762 1119 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 GNRH1P01148 92 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 MCM2P49736 904 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 HERVK_113P62684 666 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 KIF22Q14807 665 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 GRM4Q14833 912 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 FAM110CQ1W6H9 321 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 CCDC96Q2M329 555 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 FAM83BQ5T0W9 1011 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 C17orf99Q6UX52 265 aa9.62□□□□□ -0.87
USP54-212ENST00000480210 SPICE1Q8N0Z3 855 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms