RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TMEM221A6NGB7 291 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 ZBBXA8MT70 800 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 C19orf81C9J6K1 198 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 USP17L10C9JJH3 530 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 F6X3S4 739 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 M0R296 226 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 ARVCFO00192 962 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 CTAGE5O15320 804 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 GDF11O95390 407 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 LDHBP07195 334 aaKnown RBP6.07□□□□□ -1.44
USP4-209ENST00000475873 ERCC3P19447 782 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 BTDP43251 543 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 CCNA1P78396 465 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 TRIM26Q12899 539 aaPredicted RBP6.07□□□□□ -1.44
USP4-209ENST00000475873 CATSPERGQ6ZRH7 1159 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 ADHFE1Q8IWW8 467 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 KLHDC4Q8TBB5 520 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 EDAQ92838 391 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 ATOH1Q92858 354 aaPredicted RBP6.07□□□□□ -1.44
USP4-209ENST00000475873 PBXIP1Q96AQ6 731 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 CDCA7LQ96GN5 454 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 SCLYQ96I15 445 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 C12orf42Q96LP6 360 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 AGBL1Q96MI9 1066 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 MTIF3Q9H2K0 278 aaKnown RBP6.07□□□□□ -1.44
USP4-209ENST00000475873 PNNQ9H307 717 aaKnown RBP6.07□□□□□ -1.44
USP4-209ENST00000475873 HIPK3Q9H422 1215 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 MYH16Q9H6N6 1097 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 SUGCTQ9HAC7 445 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 AS3MTQ9HBK9 375 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 UNC79Q9P2D8 2635 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 ZNF536O15090 1300 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 GRIN2DO15399 1336 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 ELP1O95163 1332 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 SALL1Q9NSC2 1324 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 FLNBO75369 2602 aaKnown RBP6.06□□□□□ -1.44
USP4-209ENST00000475873 ATG2AQ2TAZ0 1938 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 MOXD2PA6NHM9 499 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 NPM3O75607 178 aaKnown RBP6.06□□□□□ -1.44
USP4-209ENST00000475873 ASGR1P07306 291 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 VCAM1P19320 739 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 FLIIQ13045 1269 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 COL19A1Q14993 1142 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 ZYXQ15942 572 aaKnown RBP6.06□□□□□ -1.44
USP4-209ENST00000475873 METTL24Q5JXM2 366 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 BEND3Q5T5X7 828 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 TRIM67Q6ZTA4 783 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 TMCO2Q7Z6W1 182 aaPredicted RBP6.06□□□□□ -1.44
USP4-209ENST00000475873 RNF135Q8IUD6 432 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 FBXL6Q8N531 539 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 SLC43A3Q8NBI5 491 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 NUP133Q8WUM0 1156 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 FAM163AQ96GL9 167 aaPredicted RBP6.06□□□□□ -1.44
USP4-209ENST00000475873 SUCLG2Q96I99 432 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 LMCD1Q9NZU5 365 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 ZBTB21Q9ULJ3 1066 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 MCM3APO60318 1980 aa6.06□□□□□ -1.44
USP4-209ENST00000475873 MROH7-TTC4A0A0A0MT08 1334 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 MROH7Q68CQ1 1323 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 CDK5RAP2Q96SN8 1893 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 SIP14410 1827 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 GPR75-ASB3A0A0A6YYF3 556 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 A0A0U1RQG5 324 aaPredicted RBP6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L15C9J2P7 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L13C9JLJ4 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L11C9JVI0 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L18D6R9N7 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L22D6RA61 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L17D6RBQ6 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L19D6RCP7 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L20D6RJB6 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 GRM8O00222 908 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 PGK2P07205 417 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 ASNSP08243 561 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 PTGS1P23219 599 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 CST5P28325 142 aaPredicted RBP6.05□□□□□ -1.44
USP4-209ENST00000475873 LTBRP36941 435 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 NBL1P41271 181 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 PHKA1P46020 1223 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L24Q0WX57 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 USP17L2Q6R6M4 530 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 METTL16Q86W50 562 aaKnown RBP6.05□□□□□ -1.44
USP4-209ENST00000475873 HERC6Q8IVU3 1022 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 ANKRD44Q8N8A2 993 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 ACER1Q8TDN7 264 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 ASIC4Q96FT7 647 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 PRRX2Q99811 253 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 SPATC1LQ9H0A9 340 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 TRPV6Q9H1D0 765 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 IFT57Q9NWB7 429 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 PRKAG3Q9UGI9 489 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 NRBP1Q9UHY1 535 aa6.05□□□□□ -1.44
USP4-209ENST00000475873 STRNO43815 780 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 B4GALT4O60513 344 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 SNAI1O95863 264 aaPredicted RBP6.04□□□□□ -1.44
USP4-209ENST00000475873 PDGFBP01127 241 aaPredicted RBP6.04□□□□□ -1.44
USP4-209ENST00000475873 AKR1A1P14550 325 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 AVPR2P30518 371 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 DSG3P32926 999 aa6.04□□□□□ -1.44
USP4-209ENST00000475873 ZEB1P37275 1124 aaPredicted RBP6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms