RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 EIF5BO60841 1220 aaKnown RBP16.71■□□□□ 0.27
BRCA1-211ENST00000472490 SLC1A4P43007 532 aa16.71■□□□□ 0.27
BRCA1-211ENST00000472490 FBXO46Q6PJ61 603 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-211ENST00000472490 COA7Q96BR5 231 aa16.71■□□□□ 0.27
BRCA1-211ENST00000472490 ZSCAN10Q96SZ4 725 aaPredicted RBP16.71■□□□□ 0.27
BRCA1-211ENST00000472490 PAGR1Q9BTK6 254 aa16.71■□□□□ 0.27
BRCA1-211ENST00000472490 RBPJLQ9UBG7 517 aa16.71■□□□□ 0.27
BRCA1-211ENST00000472490 FEM1BQ9UK73 627 aa16.71■□□□□ 0.27
BRCA1-211ENST00000472490 ERICH2A1L162 156 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 E7EWF7 191 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 TNPO2O14787 897 aaKnown RBP16.7■□□□□ 0.26
BRCA1-211ENST00000472490 BMP3P12645 472 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 MAPK4P31152 587 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 ERVK-9P63128 1117 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 ERVK-24P63145 666 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 SART3Q15020 963 aaKnown RBP16.7■□□□□ 0.26
BRCA1-211ENST00000472490 NECTIN1Q15223 517 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 PRPF38AQ8NAV1 312 aaKnown RBP16.7■□□□□ 0.26
BRCA1-211ENST00000472490 TRIM47Q96LD4 638 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 SLF1Q9BQI6 1058 aa16.7■□□□□ 0.26
BRCA1-211ENST00000472490 ISY1Q9ULR0 285 aaKnown RBP16.7■□□□□ 0.26
BRCA1-211ENST00000472490 GREB1LQ9C091 1923 aaPredicted RBP16.69■□□□□ 0.26
BRCA1-211ENST00000472490 EPB41L2O43491 1005 aaKnown RBP16.69■□□□□ 0.26
BRCA1-211ENST00000472490 ZKSCAN1P17029 563 aaPredicted RBP16.69■□□□□ 0.26
BRCA1-211ENST00000472490 CREB3L3Q68CJ9 461 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 RCSD1Q6JBY9 416 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 FAM160B2Q86V87 743 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 CHURC1Q8WUH1 139 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 DCAF4Q8WV16 495 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 TMEM47Q9BQJ4 181 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 ZKSCAN3Q9BRR0 538 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 ARHGAP39Q9C0H5 1083 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 KAT14Q9H8E8 782 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 CWC22Q9HCG8 908 aaKnown RBP16.69■□□□□ 0.26
BRCA1-211ENST00000472490 TXNRD2Q9NNW7 524 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 PPP1R9AQ9ULJ8 1098 aa16.69■□□□□ 0.26
BRCA1-211ENST00000472490 CTDP1Q9Y5B0 961 aaPredicted RBP16.69■□□□□ 0.26
BRCA1-211ENST00000472490 SLC27A2O14975 620 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 FDX1P10109 184 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 MCCP23508 829 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 STAT2P52630 851 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 IKQ13123 557 aaPredicted RBP16.68■□□□□ 0.26
BRCA1-211ENST00000472490 ANKS1AQ92625 1134 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 NUP88Q99567 741 aaPredicted RBP16.68■□□□□ 0.26
BRCA1-211ENST00000472490 SRRDQ9UH36 339 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 PTPN22Q9Y2R2 807 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 TNKSO95271 1327 aa16.68■□□□□ 0.26
BRCA1-211ENST00000472490 VWA5AO00534 786 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 PLA2G6O60733 806 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 KRT32Q14532 448 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 IFIT1BQ5T764 474 aaKnown RBP16.67■□□□□ 0.26
BRCA1-211ENST00000472490 RAET1EQ8TD07 263 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 ATG4CQ96DT6 458 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 MTA3Q9BTC8 594 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 FBXO28Q9NVF7 368 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 ADAMTS5Q9UNA0 930 aa16.67■□□□□ 0.26
BRCA1-211ENST00000472490 TMEM232C9JQI7 657 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 ZBED4O75132 1171 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 ECM2O94769 699 aaPredicted RBP16.66■□□□□ 0.26
BRCA1-211ENST00000472490 COPB2P35606 906 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 CCDC96Q2M329 555 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 Q3C1V9 767 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 NBPF11Q86T75 865 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 ENAHQ8N8S7 591 aaPredicted RBP16.66■□□□□ 0.26
BRCA1-211ENST00000472490 PNMA1Q8ND90 353 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 SOCS4Q8WXH5 440 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 KIFC2Q96AC6 838 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 SPATC1LQ9H0A9 340 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 BTBD7Q9P203 1132 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 MTMR7Q9Y216 660 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 LAMA4Q16363 1823 aa16.66■□□□□ 0.26
BRCA1-211ENST00000472490 IFIT3O14879 490 aaKnown RBP16.65■□□□□ 0.26
BRCA1-211ENST00000472490 CNMDO75829 334 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 SLC25A27O95847 323 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 PDHBP11177 359 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 CTGFP29279 349 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 MCM5P33992 734 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 PLS1Q14651 629 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 TSGA10IPQ3SY00 556 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 GPATCH4Q5T3I0 446 aaKnown RBP16.65■□□□□ 0.26
BRCA1-211ENST00000472490 SHCBP1Q8NEM2 672 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 ABHD8Q96I13 439 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 MROH8Q9H579 483 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 IVNS1ABPQ9Y6Y0 642 aa16.65■□□□□ 0.26
BRCA1-211ENST00000472490 CASP8AP2Q9UKL3 1982 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 STRNO43815 780 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 HMGB1P09429 215 aaKnown RBP16.64■□□□□ 0.25
BRCA1-211ENST00000472490 CAP1Q01518 475 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 PRKCZQ05513 592 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 TMEM132BQ14DG7 1078 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 WTAPQ15007 396 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 WDR78Q5VTH9 848 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 POTEEQ6S8J3 1075 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 STOX1Q6ZVD7 989 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 KCTD1Q719H9 257 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 CYB5R4Q7L1T6 521 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 PLEKHH3Q7Z736 793 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 TMTC2Q8N394 836 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 NKX2-3Q8TAU0 364 aa16.64■□□□□ 0.25
BRCA1-211ENST00000472490 TMEM87BQ96K49 555 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms