RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 TOB2Q14106 344 aaPredicted RBP9.47□□□□□ -0.89
HDAC6-216ENST00000468949 RRP1BQ14684 758 aaKnown RBP9.47□□□□□ -0.89
HDAC6-216ENST00000468949 SEC23AQ15436 765 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 RTN1Q16799 776 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 SPRYD7Q5W111 196 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 APOA5Q6Q788 366 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 USP17L2Q6R6M4 530 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.47□□□□□ -0.89
HDAC6-216ENST00000468949 CCDC84Q86UT8 332 aaPredicted RBP9.47□□□□□ -0.89
HDAC6-216ENST00000468949 SGMS1Q86VZ5 419 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 HS6ST3Q8IZP7 471 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 IGDCC4Q8TDY8 1250 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 WNK4Q96J92 1243 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 CLMNQ96JQ2 1002 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 TMEM47Q9BQJ4 181 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 ALDH8A1Q9H2A2 487 aaPredicted RBP9.47□□□□□ -0.89
HDAC6-216ENST00000468949 TSHZ2Q9NRE2 1034 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 RBM28Q9NW13 759 aaKnown RBP9.47□□□□□ -0.89
HDAC6-216ENST00000468949 TSKSQ9UJT2 592 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 ATAD5Q96QE3 1844 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 C19orf81C9J6K1 198 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 K7ELQ4 463 aaPredicted RBP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 CDKL5O76039 1030 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 PARP1P09874 1014 aaKnown RBP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 GUCY1A2P33402 732 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 GNAQP50148 359 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 RCAN1P53805 252 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 AKAP17AQ02040 695 aaKnown RBP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 MKRN3Q13064 507 aaKnown RBP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 SPP2Q13103 211 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 PPIL2Q13356 520 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 SNAPC2Q13487 334 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 ASPRV1Q53RT3 343 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 IFFO2Q5TF58 517 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 SLFN13Q68D06 897 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 GADL1Q6ZQY3 521 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 RAB11FIP4Q86YS3 637 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 CCDC144CPQ8IYA2 1237 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 FBXL16Q8N461 479 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 GMCL1P1Q8NEA9 526 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 DCAF4Q8WV16 495 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 ANKS1AQ92625 1134 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 LPAR1Q92633 364 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 LARP6Q9BRS8 491 aaKnown RBP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 MYL10Q9BUA6 226 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 WDR18Q9BV38 432 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 TANGO6Q9C0B7 1094 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 KIAA1683Q9H0B3 1180 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 VCPKMTQ9H867 229 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 GPHNQ9NQX3 736 aaPredicted RBP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 TMX2Q9Y320 296 aa9.46□□□□□ -0.9
HDAC6-216ENST00000468949 CTDP1Q9Y5B0 961 aaPredicted RBP9.46□□□□□ -0.9
HDAC6-216ENST00000468949 MANSC4A6NHS7 340 aaPredicted RBP9.45□□□□□ -0.9
HDAC6-216ENST00000468949 F5H6K3 240 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 RXRAP19793 462 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 GTF2A2P52657 109 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 HMGCS2P54868 508 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 BACE1P56817 501 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 JAG1P78504 1218 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 KLRC3Q07444 240 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 PABPC4Q13310 644 aaKnown RBP eCLIP9.45□□□□□ -0.9
HDAC6-216ENST00000468949 PPP2R5BQ15173 497 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 GPATCH4Q5T3I0 446 aaKnown RBP9.45□□□□□ -0.9
HDAC6-216ENST00000468949 RCSD1Q6JBY9 416 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 FASTKD5Q7L8L6 764 aaKnown RBP9.45□□□□□ -0.9
HDAC6-216ENST00000468949 SPICE1Q8N0Z3 855 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 NKX2-3Q8TAU0 364 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 ACER1Q8TDN7 264 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 SNX21Q969T3 373 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 ZNF274Q96GC6 653 aaPredicted RBP9.45□□□□□ -0.9
HDAC6-216ENST00000468949 AGXT2Q9BYV1 514 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 TPCN1Q9ULQ1 816 aa9.45□□□□□ -0.9
HDAC6-216ENST00000468949 RBM19Q9Y4C8 960 aaKnown RBP9.45□□□□□ -0.9
HDAC6-216ENST00000468949 FRMPD2Q68DX3 1309 aaPredicted RBP9.45□□□□□ -0.9
HDAC6-216ENST00000468949 GREB1LQ9C091 1923 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 CXCL11O14625 94 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 IRF6O14896 467 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 WDR46O15213 610 aaKnown RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 TRPA1O75762 1119 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 NDUFB10O96000 172 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 ALDH1A1P00352 501 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 PDHBP11177 359 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 CETPP11597 493 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 BMP3P12645 472 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 PDIA3P30101 505 aaKnown RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 STAT2P52630 851 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 CCT2P78371 535 aaKnown RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 IRX3P78415 501 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 COL9A3Q14050 684 aaPredicted RBP9.44□□□□□ -0.9
HDAC6-216ENST00000468949 GRM4Q14833 912 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 CCDC83Q8IWF9 413 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 TRIM22Q8IYM9 498 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 GTF3C6Q969F1 213 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 MKL1Q969V6 931 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 GMCL1Q96IK5 515 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 MAP3K14Q99558 947 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 LZTS2Q9BRK4 669 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 SENP2Q9HC62 589 aa9.44□□□□□ -0.9
HDAC6-216ENST00000468949 GPCPD1Q9NPB8 672 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms