RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ERO1BQ86YB8 467 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 ZBED3Q96IU2 234 aaPredicted RBP6.91□□□□□ -1.3
HMGB1-207ENST00000468384 ZC3H12CQ9C0D7 883 aaKnown RBP6.91□□□□□ -1.3
HMGB1-207ENST00000468384 SEMA4AQ9H3S1 761 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 GJD2Q9UKL4 321 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 CDV3Q9UKY7 258 aaKnown RBP6.91□□□□□ -1.3
HMGB1-207ENST00000468384 ZNF804BA4D1E1 1349 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 MYBBP1AQ9BQG0 1328 aaKnown RBP6.91□□□□□ -1.3
HMGB1-207ENST00000468384 DMXL2Q8TDJ6 3036 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 EIF4E1BA6NMX2 242 aaKnown RBP6.9□□□□□ -1.3
HMGB1-207ENST00000468384 PHF20L1A8MW92 1017 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 H3BQ06 376 aaPredicted RBP6.9□□□□□ -1.3
HMGB1-207ENST00000468384 APBB1O00213 710 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 PIP4K2AP48426 406 aaPredicted RBP6.9□□□□□ -1.3
HMGB1-207ENST00000468384 PPIL2Q13356 520 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 ZNF365Q70YC5 407 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.9□□□□□ -1.3
HMGB1-207ENST00000468384 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.9□□□□□ -1.3
HMGB1-207ENST00000468384 NEK9Q8TD19 979 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 ARNTL2Q8WYA1 636 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 RUBCNQ92622 972 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 THAP11Q96EK4 314 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 POP1Q99575 1024 aaKnown RBP6.9□□□□□ -1.3
HMGB1-207ENST00000468384 GOPCQ9HD26 462 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 PCDHA11Q9Y5I1 949 aa6.9□□□□□ -1.3
HMGB1-207ENST00000468384 POLQO75417 2590 aa6.9□□□□□ -1.31
HMGB1-207ENST00000468384 C1QTNF9BB2RNN3 333 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 LPXNO60711 386 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 C1QTNF9P0C862 333 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 MS4A1P11836 297 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 PMLP29590 882 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 CCR10P46092 362 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 RBM25P49756 843 aaKnown RBP6.89□□□□□ -1.31
HMGB1-207ENST00000468384 GPSM2P81274 684 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 GRAPQ13588 217 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 C1orf53Q5VUE5 145 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 GIGYF2Q6Y7W6 1299 aaKnown RBP6.89□□□□□ -1.31
HMGB1-207ENST00000468384 GRAPLQ8TC17 118 aaPredicted RBP6.89□□□□□ -1.31
HMGB1-207ENST00000468384 MXD3Q9BW11 206 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 EMILIN1Q9Y6C2 1016 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 SNCAIPQ9Y6H5 919 aa6.89□□□□□ -1.31
HMGB1-207ENST00000468384 RLFQ13129 1914 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 IBTKQ9P2D0 1353 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-207ENST00000468384 PDGFBP01127 241 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-207ENST00000468384 ACRP10323 421 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 PTGDRQ13258 359 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 PPIGQ13427 754 aaKnown RBP eCLIP6.88□□□□□ -1.31
HMGB1-207ENST00000468384 MOGSQ13724 837 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 PSRC1Q6PGN9 363 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-207ENST00000468384 UNQ6494/PRO21346Q6UXR6 183 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 ZGPATQ8N5A5 531 aaKnown RBP6.88□□□□□ -1.31
HMGB1-207ENST00000468384 TMEM105Q8N8V8 129 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 CYP2W1Q8TAV3 490 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 TBC1D16Q8TBP0 767 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 CLUAP1Q96AJ1 413 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 LGR6Q9HBX8 967 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 TMEM39AQ9NV64 488 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 LMCD1Q9NZU5 365 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 PCDHGC5Q9Y5F6 944 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 SETD2Q9BYW2 2564 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-207ENST00000468384 NAV3Q8IVL0 2385 aa6.88□□□□□ -1.31
HMGB1-207ENST00000468384 GBF1Q92538 1859 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 HEG1Q9ULI3 1381 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 TNKSO95271 1327 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 PRR5-ARHGAP8B1AHC4 643 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 MMP14P50281 582 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 ARHGAP8P85298 464 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 RASA3Q14644 834 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 SUSD4Q5VX71 490 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 DDX46Q7L014 1031 aaKnown RBP6.87□□□□□ -1.31
HMGB1-207ENST00000468384 TTC5Q8N0Z6 440 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 SLC44A5Q8NCS7 719 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 LPAR1Q92633 364 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 BBC3Q96PG8 261 aaPredicted RBP6.87□□□□□ -1.31
HMGB1-207ENST00000468384 HAUS7Q99871 368 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 WASF2Q9Y6W5 498 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 LAMA5O15230 3695 aa6.87□□□□□ -1.31
HMGB1-207ENST00000468384 PPM1GO15355 546 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-207ENST00000468384 TIMP1P01033 207 aa6.86□□□□□ -1.31
HMGB1-207ENST00000468384 CA3P07451 260 aa6.86□□□□□ -1.31
HMGB1-207ENST00000468384 CYP2B6P20813 491 aa6.86□□□□□ -1.31
HMGB1-207ENST00000468384 DACT2Q5SW24 774 aa6.86□□□□□ -1.31
HMGB1-207ENST00000468384 GJC2Q5T442 439 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-207ENST00000468384 MFSD5Q6N075 450 aa6.86□□□□□ -1.31
HMGB1-207ENST00000468384 MTIF3Q9H2K0 278 aaKnown RBP6.86□□□□□ -1.31
HMGB1-207ENST00000468384 GGNBP2Q9H3C7 697 aa6.86□□□□□ -1.31
HMGB1-207ENST00000468384 RELNP78509 3460 aa6.86□□□□□ -1.31
HMGB1-207ENST00000468384 LRRC37AA6NMS7 1700 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 UBN2Q6ZU65 1347 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 CLRN2A0PK11 232 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 LCHNA4D1U4 455 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 SIAH2O43255 324 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 NTSR2O95665 410 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 PLA2G2AP14555 144 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 CSF2RAP15509 400 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 GPTP24298 496 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 C19orf57Q0VDD7 668 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 SLC10A5Q5PT55 438 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 GLIS3Q8NEA6 775 aa6.85□□□□□ -1.31
HMGB1-207ENST00000468384 PCMTD1Q96MG8 357 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms