RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 CHST3Q7LGC8 479 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 RALYLQ86SE5 291 aaKnown RBP14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 ATG4CQ96DT6 458 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 TMEM47Q9BQJ4 181 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 UBAC1Q9BSL1 405 aa14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 COL11A1P12107 1806 aaPredicted RBP14.17□□□□□ -0.14
SHROOM3-202ENST00000466541 PARP14Q460N5 1801 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 RLFQ13129 1914 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 SLC27A2O14975 620 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 TOP1P11387 765 aaKnown RBP14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 BMP3P12645 472 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 DSG3P32926 999 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 SLC1A4P43007 532 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 CREB3L3Q68CJ9 461 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 STOX1Q6ZVD7 989 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 KCTD1Q719H9 257 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 CYB5R4Q7L1T6 521 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 GMCL1P1Q8NEA9 526 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 KIFC2Q96AC6 838 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 ZSCAN10Q96SZ4 725 aaPredicted RBP14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 TCP11L1Q9NUJ3 509 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 BTBD7Q9P203 1132 aa14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 CTDP1Q9Y5B0 961 aaPredicted RBP14.16□□□□□ -0.14
SHROOM3-202ENST00000466541 TMEM232C9JQI7 657 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 CNMDO75829 334 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 MYCP01106 439 aaPredicted RBP14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 HOXD10P28358 340 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 PKN2Q16513 984 aaKnown RBP14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 FBXO46Q6PJ61 603 aaPredicted RBP14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 NCOA7Q8NI08 942 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 GTF3C2Q8WUA4 911 aaPredicted RBP14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 COA7Q96BR5 231 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 ABHD8Q96I13 439 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 SLF1Q9BQI6 1058 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 GPCPD1Q9NPB8 672 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 GABRQQ9UN88 632 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 PTPN22Q9Y2R2 807 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 RABGAP1Q9Y3P9 1069 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 PTCH2Q9Y6C5 1203 aa14.15□□□□□ -0.14
SHROOM3-202ENST00000466541 TNKSO95271 1327 aa14.15□□□□□ -0.15
SHROOM3-202ENST00000466541 FRMPD2Q68DX3 1309 aaPredicted RBP14.15□□□□□ -0.15
SHROOM3-202ENST00000466541 MYPNQ86TC9 1320 aa14.15□□□□□ -0.15
SHROOM3-202ENST00000466541 CCDC85CA6NKD9 419 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 SNAP25P60880 206 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 CCNA1P78396 465 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 PRKCZQ05513 592 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 RCSD1Q6JBY9 416 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 ENAHQ8N8S7 591 aaPredicted RBP14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 RAET1EQ8TD07 263 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 PORCNQ9H237 461 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 KAT14Q9H8E8 782 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 MORF4L1Q9UBU8 362 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 PPP1R9AQ9ULJ8 1098 aa14.14□□□□□ -0.15
SHROOM3-202ENST00000466541 IFIT3O14879 490 aaKnown RBP14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 SLC16A2P36021 539 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 TMEM132BQ14DG7 1078 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 NECTIN1Q15223 517 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 CCDC178Q5BJE1 867 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 IFIT1BQ5T764 474 aaKnown RBP14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 RNF20Q5VTR2 975 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 LBX2Q6XYB7 198 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 NCAPG2Q86XI2 1143 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 CPXCR1Q8N123 301 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 PRPF38AQ8NAV1 312 aaKnown RBP14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 TTC14Q96N46 770 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 SRRDQ9UH36 339 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 FEM1BQ9UK73 627 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 SYNPO2Q9UMS6 1093 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 HPS5Q9UPZ3 1129 aa14.13□□□□□ -0.15
SHROOM3-202ENST00000466541 ERICH2A1L162 156 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 VWA5AO00534 786 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 ZBED4O75132 1171 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 REC8O95072 547 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 GNRH1P01148 92 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 GOLGA8HP0CJ92 632 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 FLT3LGP49771 235 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 STAT2P52630 851 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 TMEM67Q5HYA8 995 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 TTBK2Q6IQ55 1244 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 DGKHQ86XP1 1220 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 MB21D1Q8N884 522 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 PNMA1Q8ND90 353 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 SH3TC2Q8TF17 1288 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 CHURC1Q8WUH1 139 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 DCAF4Q8WV16 495 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 GMCL1Q96IK5 515 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 MOV10L1Q9BXT6 1211 aaKnown RBP14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 LRRC2Q9BYS8 371 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 SPATC1LQ9H0A9 340 aa14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 BIN2Q9UBW5 565 aaPredicted RBP14.12□□□□□ -0.15
SHROOM3-202ENST00000466541 CYP2B6P20813 491 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 MAPK4P31152 587 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 NOVP48745 357 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 WTAPQ15007 396 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 SART3Q15020 963 aaKnown RBP14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 SLC9C1Q4G0N8 1177 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 CCDC174Q6PII3 467 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 GPR142Q7Z601 462 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 PLEKHH3Q7Z736 793 aa14.11□□□□□ -0.15
SHROOM3-202ENST00000466541 MB21D2Q8IYB1 491 aaPredicted RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms