RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MAD2L2Q9UI95 211 aa10.17□□□□□ -0.78
SYNE1-217ENST00000466159 PPP1R3GB7ZBB8 358 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 TEX33O43247 280 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 CYTH3O43739 400 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 PPP4CP60510 307 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 GSTO1P78417 241 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 SPATA1Q5VX52 437 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 RASGRP2Q7LDG7 609 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 REXO1L1PQ8IX06 675 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 ZNF444Q8N0Y2 327 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-217ENST00000466159 ANKS1AQ92625 1134 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 MTRQ99707 1265 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 STX8Q9UNK0 236 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 LY75O60449 1722 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 SPDYE4A6NLX3 237 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 ZBTB22O15209 634 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 CALML3P27482 149 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 ETF1P62495 437 aaKnown RBP10.16□□□□□ -0.78
SYNE1-217ENST00000466159 CBX1P83916 185 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 GRM4Q14833 912 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 PDXDC2PQ6P474 469 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 TRIM65Q6PJ69 517 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 APTXQ7Z2E3 356 aaKnown RBP10.16□□□□□ -0.78
SYNE1-217ENST00000466159 C4orf32Q8N8J7 132 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 IQUBQ8NA54 791 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 RPGRQ92834 1020 aaKnown RBP10.16□□□□□ -0.78
SYNE1-217ENST00000466159 BAG1Q99933 345 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-217ENST00000466159 RTFDC1Q9BY42 306 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-217ENST00000466159 DNAI1Q9UI46 699 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 SYNRGQ9UMZ2 1314 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 PCDHA4Q9UN74 947 aa10.16□□□□□ -0.78
SYNE1-217ENST00000466159 THSD7AQ9UPZ6 1657 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 ROBO3Q96MS0 1386 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.15□□□□□ -0.78
SYNE1-217ENST00000466159 A0A1B0GTH6 734 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 FANCGO15287 622 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 ARHGAP6O43182 974 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 UFL1O94874 794 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 SLU7O95391 586 aaKnown RBP10.15□□□□□ -0.78
SYNE1-217ENST00000466159 GOLGA8HP0CJ92 632 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 RASA1P20936 1047 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 AMOTL1Q8IY63 956 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 LRRN4CLQ8ND94 238 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 TMEM47Q9BQJ4 181 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 CPVLQ9H3G5 476 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 L2HGDHQ9H9P8 463 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 CD209Q9NNX6 404 aa10.15□□□□□ -0.78
SYNE1-217ENST00000466159 CCP110O43303 1012 aa10.15□□□□□ -0.79
SYNE1-217ENST00000466159 BTDP43251 543 aa10.15□□□□□ -0.79
SYNE1-217ENST00000466159 WWC2Q6AWC2 1192 aa10.15□□□□□ -0.79
SYNE1-217ENST00000466159 HEATR3Q7Z4Q2 680 aa10.15□□□□□ -0.79
SYNE1-217ENST00000466159 ERO1AQ96HE7 468 aa10.15□□□□□ -0.79
SYNE1-217ENST00000466159 SH3GLB2Q9NR46 395 aa10.15□□□□□ -0.79
SYNE1-217ENST00000466159 PPP2R2CQ9Y2T4 447 aa10.15□□□□□ -0.79
SYNE1-217ENST00000466159 NAV1Q8NEY1 1877 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 M0R2N6 131 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 LDHCP07864 332 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 ELF2Q15723 593 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 CCDC93Q567U6 631 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 CT47A1Q5JQC4 288 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-217ENST00000466159 TOGARAM2Q6ZUX3 1019 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 FAM177A1Q8N128 213 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-217ENST00000466159 TCP11L1Q9NUJ3 509 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 PCDHA6Q9UN73 950 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 CTNND2Q9UQB3 1225 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 PCDHA8Q9Y5H6 950 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 CCDC194A0A1B0GVG4 234 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 STX10O60499 249 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 GNAQP50148 359 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 KARSQ15046 597 aaKnown RBP10.14□□□□□ -0.79
SYNE1-217ENST00000466159 INF2Q27J81 1249 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 CDKAL1Q5VV42 579 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 RRAGBQ5VZM2 374 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 ARL6IP4Q66PJ3 421 aaKnown RBP10.14□□□□□ -0.79
SYNE1-217ENST00000466159 C15orf52Q6ZUT6 534 aaKnown RBP10.14□□□□□ -0.79
SYNE1-217ENST00000466159 TMEM60Q9H2L4 133 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 CGNQ9P2M7 1197 aaKnown RBP10.14□□□□□ -0.79
SYNE1-217ENST00000466159 ADD3Q9UEY8 706 aaKnown RBP10.14□□□□□ -0.79
SYNE1-217ENST00000466159 CDK5RAP2Q96SN8 1893 aa10.14□□□□□ -0.79
SYNE1-217ENST00000466159 PALM3A6NDB9 673 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-217ENST00000466159 PP2D1A8MPX8 630 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 ZSCAN12O43309 604 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 GYS1P13807 737 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 LONP1P36776 959 aaKnown RBP10.13□□□□□ -0.79
SYNE1-217ENST00000466159 CDK8P49336 464 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 FCHSD1Q86WN1 690 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 TEX11Q8IYF3 940 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 CPLX3Q8WVH0 158 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 GJD4Q96KN9 370 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-217ENST00000466159 GGA1Q9UJY5 639 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 GPR75-ASB3A0A0A6YYF3 556 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 KLRF2D3W0D1 207 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 STXBP3O00186 592 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 GTPBP6O43824 516 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-217ENST00000466159 TUBB4AP04350 444 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 SERPINB2P05120 415 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 RBL2Q08999 1139 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 CRY2Q49AN0 593 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 CCDC178Q5BJE1 867 aa10.13□□□□□ -0.79
SYNE1-217ENST00000466159 EYA3Q99504 573 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms