RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 MBIPQ9NS73 344 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 RBPJLQ9UBG7 517 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 TIMELESSQ9UNS1 1208 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 USP24Q9UPU5 2620 aa3.42□□□□□ -1.86
USP40-211ENST00000464956 ZNF292O60281 2723 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 ATP5J2-PTCD1G3V325 749 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 ADAMTS4O75173 837 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 BRD1O95696 1058 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 IGHA2P01877 340 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 SP9P0CG40 484 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 ATF7P17544 494 aaPredicted RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 RFX1P22670 979 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 HOXA7P31268 230 aaPredicted RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 RFC2P35250 354 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 CWF19L1Q69YN2 538 aaKnown RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 C19orf48Q6RUI8 117 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 C15orf52Q6ZUT6 534 aaKnown RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 MCM10Q7L590 875 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 MORC1Q86VD1 984 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 SMRP1Q8NCR6 262 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 XAGE3Q8WTP9 111 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 PPP2R3CQ969Q6 453 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 ZFP91Q96JP5 570 aaPredicted RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 FAM84BQ96KN1 310 aaPredicted RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 ZDHHC15Q96MV8 337 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 SAMD11Q96NU1 681 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 BBC3Q96PG8 261 aaPredicted RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 MPHOSPH8Q99549 860 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 SEZ6LQ9BYH1 1024 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 AS3MTQ9HBK9 375 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 INCENPQ9NQS7 918 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 RABGAP1Q9Y3P9 1069 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 USP15Q9Y4E8 981 aaPredicted RBP3.41□□□□□ -1.86
USP40-211ENST00000464956 GPSM3Q9Y4H4 160 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 MGAMO43451 1857 aa3.41□□□□□ -1.86
USP40-211ENST00000464956 ANKRD36CQ5JPF3 1778 aa3.4□□□□□ -1.86
USP40-211ENST00000464956 COL4A4P53420 1690 aaPredicted RBP3.4□□□□□ -1.86
USP40-211ENST00000464956 H3BNC9 293 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 TK2O00142 265 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 STK25O00506 426 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 PI15O43692 258 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 STRNO43815 780 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 FOXD2O60548 495 aaPredicted RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 ASGR1P07306 291 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 C6orf222P0C671 652 aaPredicted RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 EIF2S2P20042 333 aaKnown RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 CST5P28325 142 aaPredicted RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 ADORA2AP29274 412 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 RRP1P56182 461 aaKnown RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 EIF4A1P60842 406 aaKnown RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 KCNC4Q03721 635 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 HYAL1Q12794 435 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 COASYQ13057 564 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 GPM6BQ13491 265 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 COL28A1Q2UY09 1125 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 EPC2Q52LR7 807 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 SH3D19Q5HYK7 790 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 CCSAPQ6IQ19 270 aaPredicted RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 APOBEC3HQ6NTF7 200 aaKnown RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 FAM117BQ6P1L5 589 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 LRP10Q7Z4F1 713 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 CCDC84Q86UT8 332 aaPredicted RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 SHCBP1Q8NEM2 672 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 KLHDC9Q8NEP7 349 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 WHAMMQ8TF30 809 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 ATRIPQ8WXE1 791 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 MSLNLQ96KJ4 702 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 AGBL1Q96MI9 1066 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 C17orf80Q9BSJ5 609 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 ISCA1Q9BUE6 129 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 TMEM121BQ9BXQ6 578 aaPredicted RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 IGFLR1Q9H665 355 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 RNF216Q9NWF9 866 aaPredicted RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 MIS18AQ9NYP9 233 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 SMG5Q9UPR3 1016 aaKnown RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 CNPY2Q9Y2B0 182 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 NR2E1Q9Y466 385 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 INSL6Q9Y581 213 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.4□□□□□ -1.87
USP40-211ENST00000464956 MAST3O60307 1309 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 SYNRGQ9UMZ2 1314 aa3.4□□□□□ -1.87
USP40-211ENST00000464956 ROBO3Q96MS0 1386 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 RLFQ13129 1914 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 USP17L5A8MUK1 530 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 TBC1D4O60343 1298 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 LRP3O75074 770 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 CABYRO75952 493 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 GJB5O95377 273 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 SEC24BO95487 1268 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 ANXA1P04083 346 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 PRB1P04280 392 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 SUPT20HL2P0C7V6 817 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 TGM1P22735 817 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 CTSWP56202 376 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 WDR5P61964 334 aaKnown RBP3.39□□□□□ -1.87
USP40-211ENST00000464956 SPEM2Q0P670 501 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 FOXC1Q12948 553 aa3.39□□□□□ -1.87
USP40-211ENST00000464956 TRIM28Q13263 835 aaKnown RBP3.39□□□□□ -1.87
USP40-211ENST00000464956 ADAM15Q13444 863 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms