RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 GNPTABQ3T906 1256 aa9.41□□□□□ -0.9
PTCD3-205ENST00000464541 SLC23A3Q6PIS1 610 aa9.41□□□□□ -0.9
PTCD3-205ENST00000464541 ZNF655Q8N720 491 aaPredicted RBP9.41□□□□□ -0.9
PTCD3-205ENST00000464541 HDAC8Q9BY41 377 aa9.41□□□□□ -0.9
PTCD3-205ENST00000464541 PRDM14Q9GZV8 571 aa9.41□□□□□ -0.9
PTCD3-205ENST00000464541 ZP2Q05996 745 aa9.4□□□□□ -0.9
PTCD3-205ENST00000464541 PLCL1Q15111 1095 aa9.4□□□□□ -0.9
PTCD3-205ENST00000464541 AXDND1Q5T1B0 1012 aaPredicted RBP9.4□□□□□ -0.9
PTCD3-205ENST00000464541 DUSP13Q9UII6 198 aa9.4□□□□□ -0.9
PTCD3-205ENST00000464541 FBXL21Q9UKT6 434 aa9.4□□□□□ -0.9
PTCD3-205ENST00000464541 SHISA3A0PJX4 238 aa9.39□□□□□ -0.91
PTCD3-205ENST00000464541 ESR1P03372 595 aa9.39□□□□□ -0.91
PTCD3-205ENST00000464541 CD96P40200 585 aa9.39□□□□□ -0.91
PTCD3-205ENST00000464541 TCEAL1Q15170 157 aa9.39□□□□□ -0.91
PTCD3-205ENST00000464541 TDRD10Q5VZ19 366 aaKnown RBP9.39□□□□□ -0.91
PTCD3-205ENST00000464541 VHLLQ6RSH7 139 aa9.39□□□□□ -0.91
PTCD3-205ENST00000464541 TMC3Q7Z5M5 1100 aa9.39□□□□□ -0.91
PTCD3-205ENST00000464541 CCDC120Q96HB5 630 aa9.39□□□□□ -0.91
PTCD3-205ENST00000464541 R3HCC1Q9Y3T6 440 aaKnown RBP9.39□□□□□ -0.91
PTCD3-205ENST00000464541 A0A087WZG4 1122 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 SHOXO15266 292 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 STK10O94804 968 aaKnown RBP9.38□□□□□ -0.91
PTCD3-205ENST00000464541 PRAMEF1O95521 474 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 ZNF143P52747 638 aaPredicted RBP9.38□□□□□ -0.91
PTCD3-205ENST00000464541 SNW1Q13573 536 aaKnown RBP9.38□□□□□ -0.91
PTCD3-205ENST00000464541 FXNQ16595 210 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 CREG2Q8IUH2 290 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 PI4K2BQ8TCG2 481 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 KLHL6Q8WZ60 621 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 CARS2Q9HA77 564 aaKnown RBP9.38□□□□□ -0.91
PTCD3-205ENST00000464541 CHST7Q9NS84 486 aa9.38□□□□□ -0.91
PTCD3-205ENST00000464541 OAS3Q9Y6K5 1087 aaKnown RBP9.38□□□□□ -0.91
PTCD3-205ENST00000464541 TP53P04637 393 aaPredicted RBP9.37□□□□□ -0.91
PTCD3-205ENST00000464541 NAT2P11245 290 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 CD247P20963 164 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 LTKP29376 864 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 DCAF15Q66K64 600 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 RNF111Q6ZNA4 994 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 ABI1Q8IZP0 508 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 HAUS7Q99871 368 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 GBP3Q9H0R5 595 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 GP6Q9HCN6 339 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 FHOD1Q9Y613 1164 aa9.37□□□□□ -0.91
PTCD3-205ENST00000464541 RBAK-RBAKDNI3L0D1 243 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 CBFA2T2O43439 604 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 ITGA4P13612 1032 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 NBPF6Q5VWK0 638 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 HEATR6Q6AI08 1181 aaKnown RBP9.36□□□□□ -0.91
PTCD3-205ENST00000464541 ANKS3Q6ZW76 656 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 CKAP2LQ8IYA6 745 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 SREK1Q8WXA9 508 aaKnown RBP9.36□□□□□ -0.91
PTCD3-205ENST00000464541 NBPF4Q96M43 638 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 KLHL25Q9H0H3 589 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 GFOD1Q9NXC2 390 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 WHRNQ9P202 907 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 PCDHB10Q9UN67 800 aa9.36□□□□□ -0.91
PTCD3-205ENST00000464541 ENDOUP21128 410 aaKnown RBP9.35□□□□□ -0.91
PTCD3-205ENST00000464541 ZNF792Q3KQV3 632 aa9.35□□□□□ -0.91
PTCD3-205ENST00000464541 NOL9Q5SY16 702 aaKnown RBP9.35□□□□□ -0.91
PTCD3-205ENST00000464541 KIAA1211LQ6NV74 962 aa9.35□□□□□ -0.91
PTCD3-205ENST00000464541 LINC00116Q8NCU8 138 aa9.35□□□□□ -0.91
PTCD3-205ENST00000464541 TCTN2Q96GX1 697 aa9.35□□□□□ -0.91
PTCD3-205ENST00000464541 HIRIP3Q9BW71 556 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-205ENST00000464541 ANKRD34BA5PLL1 514 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 WASH4PA8MWX3 477 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 KLF4O43474 513 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 GSNP06396 782 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 PCBP3P57721 371 aaKnown RBP9.34□□□□□ -0.91
PTCD3-205ENST00000464541 EGR3Q06889 387 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 LARP1BQ659C4 914 aaKnown RBP9.34□□□□□ -0.91
PTCD3-205ENST00000464541 CBLL1Q75N03 491 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 ALPK1Q96QP1 1244 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 MBNL3Q9NUK0 354 aaKnown RBP9.34□□□□□ -0.91
PTCD3-205ENST00000464541 ZNF451Q9Y4E5 1061 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 PCDHA11Q9Y5I1 949 aa9.34□□□□□ -0.91
PTCD3-205ENST00000464541 BMP8BP34820 402 aa9.33□□□□□ -0.92
PTCD3-205ENST00000464541 ZNF445P59923 1031 aa9.33□□□□□ -0.92
PTCD3-205ENST00000464541 FAM178BQ8IXR5 827 aa9.33□□□□□ -0.92
PTCD3-205ENST00000464541 SYTL4Q96C24 671 aaPredicted RBP9.33□□□□□ -0.92
PTCD3-205ENST00000464541 DSCC1Q9BVC3 393 aa9.33□□□□□ -0.92
PTCD3-205ENST00000464541 ADGRE2Q9UHX3 823 aa9.33□□□□□ -0.92
PTCD3-205ENST00000464541 DIS3Q9Y2L1 958 aaKnown RBP9.33□□□□□ -0.92
PTCD3-205ENST00000464541 SF3B6Q9Y3B4 125 aaKnown RBP9.33□□□□□ -0.92
PTCD3-205ENST00000464541 PPM1BO75688 479 aa9.32□□□□□ -0.92
PTCD3-205ENST00000464541 EPHX1P07099 455 aa9.32□□□□□ -0.92
PTCD3-205ENST00000464541 RNASE1P07998 156 aaKnown RBP9.32□□□□□ -0.92
PTCD3-205ENST00000464541 RAB33AQ14088 237 aa9.32□□□□□ -0.92
PTCD3-205ENST00000464541 USHBP1Q8N6Y0 703 aa9.32□□□□□ -0.92
PTCD3-205ENST00000464541 HNRNPLLQ8WVV9 542 aaKnown RBP9.32□□□□□ -0.92
PTCD3-205ENST00000464541 FAM86C1Q9NVL1 165 aa9.32□□□□□ -0.92
PTCD3-205ENST00000464541 ADAMTS6Q9UKP5 1117 aa9.32□□□□□ -0.92
PTCD3-205ENST00000464541 ZNF281Q9Y2X9 895 aa9.32□□□□□ -0.92
PTCD3-205ENST00000464541 LOC100996750A0A140TA64 210 aa9.31□□□□□ -0.92
PTCD3-205ENST00000464541 SSU72P8A0A1W2PR75 194 aa9.31□□□□□ -0.92
PTCD3-205ENST00000464541 TEKQ02763 1124 aa9.31□□□□□ -0.92
PTCD3-205ENST00000464541 RBL2Q08999 1139 aa9.31□□□□□ -0.92
PTCD3-205ENST00000464541 SOGA3Q5TF21 947 aa9.31□□□□□ -0.92
PTCD3-205ENST00000464541 CWF19L1Q69YN2 538 aaKnown RBP9.31□□□□□ -0.92
PTCD3-205ENST00000464541 C6orf15Q6UXA7 325 aaPredicted RBP9.31□□□□□ -0.92
PTCD3-205ENST00000464541 DHX38Q92620 1227 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms