RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 CALM1P0DP23 149 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 CALM2P0DP24 149 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 CALM3P0DP25 149 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 SLURP2P0DP57 97 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 BMP3P12645 472 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 GUCY1A2P33402 732 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 HSPA4P34932 840 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 SLC1A4P43007 532 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 ANAPC15P60006 121 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 SP3Q02447 781 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 TRAF1Q13077 416 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 PPP2R5BQ15173 497 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 ZYXQ15942 572 aaKnown RBP9.06□□□□□ -0.96
USP4-207ENST00000462673 GPATCH4Q5T3I0 446 aaKnown RBP9.06□□□□□ -0.96
USP4-207ENST00000462673 SLFN13Q68D06 897 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 CATSPERGQ6ZRH7 1159 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 DHX32Q7L7V1 743 aaKnown RBP9.06□□□□□ -0.96
USP4-207ENST00000462673 CATIPQ7Z7H3 387 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 FAM160B2Q86V87 743 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 PRPF38AQ8NAV1 312 aaKnown RBP9.06□□□□□ -0.96
USP4-207ENST00000462673 ANKS1AQ92625 1134 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 CHMP4CQ96CF2 233 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 ERO1AQ96HE7 468 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 PTPN18Q99952 460 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 USP26Q9BXU7 913 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 TANGO6Q9C0B7 1094 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 EMILIN3Q9NT22 766 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 FEM1BQ9UK73 627 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 PLIN4Q96Q06 1357 aa9.06□□□□□ -0.96
USP4-207ENST00000462673 MYPNQ86TC9 1320 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 WDR19Q8NEZ3 1342 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 IGKV6D-41A0A0C4DH26 115 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 CCDC69A6NI79 296 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 IGF2BP3O00425 579 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP4-207ENST00000462673 FKTNO75072 461 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 ZBED4O75132 1171 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 FLOT1O75955 427 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 TBC1D8O95759 1140 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 HSPA1AP0DMV8 641 aaKnown RBP9.05□□□□□ -0.96
USP4-207ENST00000462673 HSPA1BP0DMV9 641 aaKnown RBP9.05□□□□□ -0.96
USP4-207ENST00000462673 NOVP48745 357 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 ZNF445P59923 1031 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 JAG1P78504 1218 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 NUCB2P80303 420 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 IKQ13123 557 aaPredicted RBP9.05□□□□□ -0.96
USP4-207ENST00000462673 WTAPQ15007 396 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 RABEP1Q15276 862 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 PKN2Q16513 984 aaKnown RBP9.05□□□□□ -0.96
USP4-207ENST00000462673 CSPP1Q1MSJ5 1256 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 GPAT2Q6NUI2 795 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 BLOC1S2Q6QNY1 142 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 NFXL1Q6ZNB6 911 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 GPRC5AQ8NFJ5 357 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 ACER1Q8TDN7 264 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 DCAF4Q8WV16 495 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 GMCL1Q96IK5 515 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP4-207ENST00000462673 IL25Q9H293 177 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 RPAP3Q9H6T3 665 aaPredicted RBP9.05□□□□□ -0.96
USP4-207ENST00000462673 CWC22Q9HCG8 908 aaKnown RBP9.05□□□□□ -0.96
USP4-207ENST00000462673 IL17RBQ9NRM6 502 aa9.05□□□□□ -0.96
USP4-207ENST00000462673 DOCK1Q14185 1865 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 A0A1W2PRG0 241 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 GPR25O00155 361 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 PLA2G6O60733 806 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 VCAM1P19320 739 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 KIF5BP33176 963 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 COPB2P35606 906 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 LIFRP42702 1097 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 GNAQP50148 359 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 STAT2P52630 851 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 PRMT2P55345 433 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 EVX2Q03828 476 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 CRHR2Q13324 411 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 ANKRD1Q15327 319 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 TMEM67Q5HYA8 995 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 CCDC84Q86UT8 332 aaPredicted RBP9.04□□□□□ -0.96
USP4-207ENST00000462673 GAS2L3Q86XJ1 694 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 SIAH1Q8IUQ4 282 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 TBC1D10CQ8IV04 446 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 ZIC5Q96T25 663 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 MAP3K14Q99558 947 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 TMEM47Q9BQJ4 181 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 TM6SF1Q9BZW5 370 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 ASCC2Q9H1I8 757 aaPredicted RBP9.04□□□□□ -0.96
USP4-207ENST00000462673 INCENPQ9NQS7 918 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 PRDM10Q9NQV6 1147 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 RABGAP1Q9Y3P9 1069 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 CYP46A1Q9Y6A2 500 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 DDX49Q9Y6V7 483 aaKnown RBP9.04□□□□□ -0.96
USP4-207ENST00000462673 TNKSO95271 1327 aa9.04□□□□□ -0.96
USP4-207ENST00000462673 CCDC196A0A1B0GTZ2 297 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 SMIM22K7EJ46 135 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 PRC1O43663 620 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 ZNF500O60304 480 aaPredicted RBP9.03□□□□□ -0.96
USP4-207ENST00000462673 BAG4O95429 457 aaKnown RBP9.03□□□□□ -0.96
USP4-207ENST00000462673 SLC25A27O95847 323 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 NDUFB10O96000 172 aa9.03□□□□□ -0.96
USP4-207ENST00000462673 PARP1P09874 1014 aaKnown RBP9.03□□□□□ -0.96
USP4-207ENST00000462673 FCGRTP55899 365 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms