RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TESPA1A2RU30 521 aaPredicted RBP18.41■□□□□ 0.54
USP40-206ENST00000443711 GOLGA8BA8MQT2 603 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 PARP1P09874 1014 aaKnown RBP18.41■□□□□ 0.54
USP40-206ENST00000443711 KIF5BP33176 963 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 KIF23Q02241 960 aaPredicted RBP18.41■□□□□ 0.54
USP40-206ENST00000443711 ZNF543Q08ER8 600 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 SREBF2Q12772 1141 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 PABPC4Q13310 644 aaKnown RBP eCLIP18.41■□□□□ 0.54
USP40-206ENST00000443711 GRM4Q14833 912 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 PPP2R5BQ15173 497 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 CCDC96Q2M329 555 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 ASPRV1Q53RT3 343 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 FAM83BQ5T0W9 1011 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 GPATCH4Q5T3I0 446 aaKnown RBP18.41■□□□□ 0.54
USP40-206ENST00000443711 MICU3Q86XE3 530 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 FANCBQ8NB91 859 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 BRI3BPQ8WY22 251 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 TPCN1Q9ULQ1 816 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 ISY1Q9ULR0 285 aaKnown RBP18.41■□□□□ 0.54
USP40-206ENST00000443711 AGTPBP1Q9UPW5 1226 aa18.41■□□□□ 0.54
USP40-206ENST00000443711 WDR33Q9C0J8 1336 aaKnown RBP18.41■□□□□ 0.54
USP40-206ENST00000443711 GOLGA8AA7E2F4 631 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L15C9J2P7 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L13C9JLJ4 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L11C9JVI0 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L18D6R9N7 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L22D6RA61 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L17D6RBQ6 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L19D6RCP7 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L20D6RJB6 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 VEGFBP49765 207 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 METAP2P50579 478 aaKnown RBP eCLIP18.4■□□□□ 0.54
USP40-206ENST00000443711 USP17L24Q0WX57 530 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 ANKRD23Q86SG2 305 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 RAB11FIP4Q86YS3 637 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 REM2Q8IYK8 340 aaPredicted RBP18.4■□□□□ 0.54
USP40-206ENST00000443711 NUP88Q99567 741 aaPredicted RBP18.4■□□□□ 0.54
USP40-206ENST00000443711 RPAP3Q9H6T3 665 aaPredicted RBP18.4■□□□□ 0.54
USP40-206ENST00000443711 GPCPD1Q9NPB8 672 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 FEM1BQ9UK73 627 aa18.4■□□□□ 0.54
USP40-206ENST00000443711 CCDC196A0A1B0GTZ2 297 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 PALM3A6NDB9 673 aaPredicted RBP18.39■□□□□ 0.53
USP40-206ENST00000443711 TMEM232C9JQI7 657 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 RXRAP19793 462 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 HOXA7P31268 230 aaPredicted RBP18.39■□□□□ 0.53
USP40-206ENST00000443711 GNAQP50148 359 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 RTN1Q16799 776 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 TREML2Q5T2D2 321 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 OTUD7BQ6GQQ9 843 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 GPAT2Q6NUI2 795 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 CATSPERGQ6ZRH7 1159 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 KCTD1Q719H9 257 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 RASGRP2Q7LDG7 609 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 CCDC144CPQ8IYA2 1237 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 CHURC1Q8WUH1 139 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 TANGO6Q9C0B7 1094 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 SLKQ9H2G2 1235 aaPredicted RBP18.39■□□□□ 0.53
USP40-206ENST00000443711 RBM28Q9NW13 759 aaKnown RBP18.39■□□□□ 0.53
USP40-206ENST00000443711 MAD2L2Q9UI95 211 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 HPS5Q9UPZ3 1129 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 SLC45A1Q9Y2W3 748 aa18.39■□□□□ 0.53
USP40-206ENST00000443711 FRMPD2Q68DX3 1309 aaPredicted RBP18.39■□□□□ 0.53
USP40-206ENST00000443711 BTBD19C9JJ37 291 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 KLRF2D3W0D1 207 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 PLA2G6O60733 806 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 AOC2O75106 756 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 CD2BP2O95400 341 aaKnown RBP18.38■□□□□ 0.53
USP40-206ENST00000443711 GOLGA8HP0CJ92 632 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 MAP2K2P36507 400 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 TM4SF4P48230 202 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 IKQ13123 557 aaPredicted RBP18.38■□□□□ 0.53
USP40-206ENST00000443711 STK3Q13188 491 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 FAM160B2Q86V87 743 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 SNX21Q969T3 373 aa18.38■□□□□ 0.53
USP40-206ENST00000443711 SH2B1Q9NRF2 756 aaPredicted RBP18.38■□□□□ 0.53
USP40-206ENST00000443711 PFKFB2O60825 505 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 OSBPP22059 807 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 CCT2P78371 535 aaKnown RBP18.37■□□□□ 0.53
USP40-206ENST00000443711 COG2Q14746 738 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 ME3Q16798 604 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 BTNL9Q6UXG8 535 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 STAG2Q8N3U4 1231 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 ZIC5Q96T25 663 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 PTPN18Q99952 460 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 LZTS2Q9BRK4 669 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 ZCCHC17Q9NP64 241 aaKnown RBP18.37■□□□□ 0.53
USP40-206ENST00000443711 PNMA3Q9UL41 463 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 NID2Q14112 1375 aa18.37■□□□□ 0.53
USP40-206ENST00000443711 PDHXO00330 501 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 DHX16O60231 1041 aaKnown RBP18.36■□□□□ 0.53
USP40-206ENST00000443711 FLOT1O75955 427 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 LARGE1O95461 756 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 SMARCA1P28370 1054 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 STAT2P52630 851 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 IRX3P78415 501 aaPredicted RBP18.36■□□□□ 0.53
USP40-206ENST00000443711 TTBK2Q6IQ55 1244 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 IFNL1Q8IU54 200 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 PRPF38AQ8NAV1 312 aaKnown RBP18.36■□□□□ 0.53
USP40-206ENST00000443711 UBA5Q9GZZ9 404 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 FAM217BQ9NTX9 383 aaPredicted RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms