RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 USP40Q9NVE5 1235 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 NAV1Q8NEY1 1877 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 ERICH4A6NGS2 130 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 SLC15A2Q16348 729 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 KIAA0825Q8IV33 1275 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 ERO1AQ96HE7 468 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 KCNQ5Q9NR82 932 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 KCNH3Q9ULD8 1083 aa16.14■□□□□ 0.17
LIMD1-202ENST00000440097 EARS2Q5JPH6 523 aaKnown RBP16.13■□□□□ 0.17
LIMD1-202ENST00000440097 CNNM3Q8NE01 707 aa16.13■□□□□ 0.17
LIMD1-202ENST00000440097 TEKT1Q969V4 418 aa16.13■□□□□ 0.17
LIMD1-202ENST00000440097 NEMFO60524 1076 aa16.13■□□□□ 0.17
LIMD1-202ENST00000440097 VEGFAP15692 232 aaPredicted RBP16.13■□□□□ 0.17
LIMD1-202ENST00000440097 RESP18Q5W5W9 173 aa16.13■□□□□ 0.17
LIMD1-202ENST00000440097 SARM1Q6SZW1 724 aa16.13■□□□□ 0.17
LIMD1-202ENST00000440097 PDILTQ8N807 584 aa16.13■□□□□ 0.17
LIMD1-202ENST00000440097 MRFAP1L1Q96HT8 127 aa16.13■□□□□ 0.17
LIMD1-202ENST00000440097 GRIN1Q05586 938 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 PFKFB3Q16875 520 aaPredicted RBP16.12■□□□□ 0.17
LIMD1-202ENST00000440097 FILIP1Q7Z7B0 1213 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 SUGT1Q9Y2Z0 365 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 NT5C2P49902 561 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 GNAQP50148 359 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 EIF6P56537 245 aaKnown RBP16.12■□□□□ 0.17
LIMD1-202ENST00000440097 IRX5P78411 483 aaPredicted RBP16.12■□□□□ 0.17
LIMD1-202ENST00000440097 CCZ1BP86790 482 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 CCZ1P86791 482 aaPredicted RBP16.12■□□□□ 0.17
LIMD1-202ENST00000440097 NOM1Q5C9Z4 860 aaKnown RBP16.12■□□□□ 0.17
LIMD1-202ENST00000440097 PIK3AP1Q6ZUJ8 805 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 RASGRP2Q7LDG7 609 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 HEATR3Q7Z4Q2 680 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 CEP95Q96GE4 821 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 LRRC37AA6NMS7 1700 aa16.12■□□□□ 0.17
LIMD1-202ENST00000440097 SF3B2Q13435 895 aaKnown RBP16.11■□□□□ 0.17
LIMD1-202ENST00000440097 ZNF174Q15697 407 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 DPCR1Q3MIW9 517 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 PODNQ7Z5L7 613 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 HOMER1Q86YM7 354 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 AOPEPQ8N6M6 819 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 CPVLQ9H3G5 476 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 ZNF446Q9NWS9 450 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 MAD2L2Q9UI95 211 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 SLU7O95391 586 aaKnown RBP16.11■□□□□ 0.17
LIMD1-202ENST00000440097 GRM4Q14833 912 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 CCAR2Q8N163 923 aaKnown RBP16.11■□□□□ 0.17
LIMD1-202ENST00000440097 TCP11L1Q9NUJ3 509 aa16.11■□□□□ 0.17
LIMD1-202ENST00000440097 KLRF2D3W0D1 207 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 PNOCQ13519 176 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 LONRF3Q496Y0 759 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 NEDD1Q8NHV4 660 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 TIGD1Q96MW7 591 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 VAT1LQ9HCJ6 419 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 DDX4Q9NQI0 724 aaKnown RBP16.1■□□□□ 0.17
LIMD1-202ENST00000440097 FBXO2Q9UK22 296 aaPredicted RBP16.1■□□□□ 0.17
LIMD1-202ENST00000440097 HPSEQ9Y251 543 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 POLR2DO15514 142 aaKnown RBP16.1■□□□□ 0.17
LIMD1-202ENST00000440097 PTPREP23469 700 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 USP17L2Q6R6M4 530 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 COL11A2P13942 1736 aaPredicted RBP16.1■□□□□ 0.17
LIMD1-202ENST00000440097 DLEC1Q9Y238 1755 aa16.1■□□□□ 0.17
LIMD1-202ENST00000440097 VGLL3A8MV65 326 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 MPHOSPH10O00566 681 aaKnown RBP16.09■□□□□ 0.17
LIMD1-202ENST00000440097 ECE2O60344 883 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 PARP1P09874 1014 aaKnown RBP16.09■□□□□ 0.17
LIMD1-202ENST00000440097 CACNB3P54284 484 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 ATP2B2Q01814 1243 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 TCP10Q12799 353 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 AOC3Q16853 763 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 STYK1Q6J9G0 422 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 ZSCAN29Q8IWY8 852 aaPredicted RBP16.09■□□□□ 0.17
LIMD1-202ENST00000440097 ANKS1AQ92625 1134 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 CNKSR1Q969H4 720 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 CSRNP2Q9H175 543 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 LTBP1Q14766 1721 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 CALML3P27482 149 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 CRKP46108 304 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 TTC38Q5R3I4 469 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 CDC42EP5Q6NZY7 148 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 SERPINB13Q9UIV8 391 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 CDK11BP21127 795 aaKnown RBP16.09■□□□□ 0.17
LIMD1-202ENST00000440097 MCM7P33993 719 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 RASGRP4Q8TDF6 673 aa16.09■□□□□ 0.17
LIMD1-202ENST00000440097 HOOK1Q9UJC3 728 aaKnown RBP16.09■□□□□ 0.17
LIMD1-202ENST00000440097 SRPRBQ9Y5M8 271 aaKnown RBP16.09■□□□□ 0.17
LIMD1-202ENST00000440097 MYH1P12882 1939 aa16.08■□□□□ 0.17
LIMD1-202ENST00000440097 SNED1Q8TER0 1413 aa16.08■□□□□ 0.17
LIMD1-202ENST00000440097 ADAMTS3O15072 1205 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 RAD21O60216 631 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 HLA-DOAP06340 250 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 TOP1P11387 765 aaKnown RBP16.08■□□□□ 0.16
LIMD1-202ENST00000440097 KRBA2Q6ZNG9 492 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 DHX40Q8IX18 779 aaKnown RBP16.08■□□□□ 0.16
LIMD1-202ENST00000440097 LRRC47Q8N1G4 583 aaKnown RBP16.08■□□□□ 0.16
LIMD1-202ENST00000440097 NRXN2Q9P2S2 1712 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 WNT7AO00755 349 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 NPY5RQ15761 445 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 CLEC10AQ8IUN9 316 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 BLIDQ8IZY5 108 aa16.08■□□□□ 0.16
LIMD1-202ENST00000440097 VWA3AA6NCI4 1184 aa16.07■□□□□ 0.16
LIMD1-202ENST00000440097 CYTH3O43739 400 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms