RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PLS1Q14651 629 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 MFSD6Q6ZSS7 791 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 RUFY2Q8WXA3 655 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 NUP88Q99567 741 aaPredicted RBP17.98■□□□□ 0.47
LIMS3-201ENST00000437679 DSCC1Q9BVC3 393 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 SPATC1LQ9H0A9 340 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 RNF41Q9H4P4 317 aaPredicted RBP17.98■□□□□ 0.47
LIMS3-201ENST00000437679 FBXO28Q9NVF7 368 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 PPP1R9AQ9ULJ8 1098 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 IVNS1ABPQ9Y6Y0 642 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 PLXNB2O15031 1838 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 PARP14Q460N5 1801 aa17.98■□□□□ 0.47
LIMS3-201ENST00000437679 ZNF213O14771 459 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 HMGCRP04035 888 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 XRCC5P13010 732 aaKnown RBP17.97■□□□□ 0.47
LIMS3-201ENST00000437679 EN2P19622 333 aaPredicted RBP17.97■□□□□ 0.47
LIMS3-201ENST00000437679 RGS2P41220 211 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 AKNAD1Q5T1N1 836 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 GMCL1P1Q8NEA9 526 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 SLF1Q9BQI6 1058 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 MOV10L1Q9BXT6 1211 aaKnown RBP17.97■□□□□ 0.47
LIMS3-201ENST00000437679 RNF208Q9H0X6 261 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 CTNNA3Q9UI47 895 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 STX8Q9UNK0 236 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 TACC3Q9Y6A5 838 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 A0A0G2JMZ2 1700 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 RAD50Q92878 1312 aa17.97■□□□□ 0.47
LIMS3-201ENST00000437679 SLC15A5A6NIM6 579 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 PTPREP23469 700 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 MORN1Q5T089 497 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 SLFN13Q68D06 897 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 TRMT44Q8IYL2 757 aaKnown RBP17.96■□□□□ 0.47
LIMS3-201ENST00000437679 SHCBP1Q8NEM2 672 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 STAG1Q8WVM7 1258 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 IL17RBQ9NRM6 502 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 ADAMTS5Q9UNA0 930 aa17.96■□□□□ 0.47
LIMS3-201ENST00000437679 VWA5AO00534 786 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 NMT2O60551 498 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 NEFLP07196 543 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 CHMLP26374 656 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 MAP2K5Q13163 448 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 IMMTQ16891 758 aaKnown RBP17.95■□□□□ 0.46
LIMS3-201ENST00000437679 NCAPG2Q86XI2 1143 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 TBC1D10CQ8IV04 446 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 NKX2-3Q8TAU0 364 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 USP6NLQ92738 828 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 UNC93B1Q9H1C4 597 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 MROH8Q9H579 483 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 FEM1BQ9UK73 627 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 ISY1Q9ULR0 285 aaKnown RBP17.95■□□□□ 0.46
LIMS3-201ENST00000437679 PDE4DIPQ5VU43 2346 aa17.95■□□□□ 0.46
LIMS3-201ENST00000437679 COL11A1P12107 1806 aaPredicted RBP17.94■□□□□ 0.46
LIMS3-201ENST00000437679 SLC25A27O95847 323 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 GJB1P08034 283 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 BMP3P12645 472 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 ZKSCAN1P17029 563 aaPredicted RBP17.94■□□□□ 0.46
LIMS3-201ENST00000437679 ERCC3P19447 782 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 TMEM132BQ14DG7 1078 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 PRPF38AQ8NAV1 312 aaKnown RBP17.94■□□□□ 0.46
LIMS3-201ENST00000437679 APBA2Q99767 749 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 NBPF3Q9H094 633 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 TCP11L1Q9NUJ3 509 aa17.94■□□□□ 0.46
LIMS3-201ENST00000437679 CTDP1Q9Y5B0 961 aaPredicted RBP17.94■□□□□ 0.46
LIMS3-201ENST00000437679 LAMA4Q16363 1823 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 BRCA2P51587 3418 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 STRNO43815 780 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 NT5C2P49902 561 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 GRB14Q14449 540 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 TRIB2Q92519 343 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 ESR2Q92731 530 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 KIFC2Q96AC6 838 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 GMCL1Q96IK5 515 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 CCDC136Q96JN2 1154 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 IL25Q9H293 177 aa17.93■□□□□ 0.46
LIMS3-201ENST00000437679 ZBED4O75132 1171 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 MCCP23508 829 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 COPB2P35606 906 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 STAT3P40763 770 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 SLC1A4P43007 532 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 GJA8P48165 433 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 NOVP48745 357 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 DPP9Q86TI2 863 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 RIOX2Q8IUF8 465 aa17.92■□□□□ 0.46
LIMS3-201ENST00000437679 TOP1P11387 765 aaKnown RBP17.91■□□□□ 0.46
LIMS3-201ENST00000437679 IKQ13123 557 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-201ENST00000437679 FAM160B2Q86V87 743 aa17.91■□□□□ 0.46
LIMS3-201ENST00000437679 REPS2Q8NFH8 660 aa17.91■□□□□ 0.46
LIMS3-201ENST00000437679 CHURC1Q8WUH1 139 aa17.91■□□□□ 0.46
LIMS3-201ENST00000437679 CHMP4CQ96CF2 233 aa17.91■□□□□ 0.46
LIMS3-201ENST00000437679 HMX1Q9NP08 348 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-201ENST00000437679 ZNF214Q9UL59 606 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-201ENST00000437679 MTMR7Q9Y216 660 aa17.91■□□□□ 0.46
LIMS3-201ENST00000437679 NEDD4P46934 1319 aa17.91■□□□□ 0.46
LIMS3-201ENST00000437679 RPTORQ8N122 1335 aa17.91■□□□□ 0.46
LIMS3-201ENST00000437679 TMEM232C9JQI7 657 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 SGPL1O95470 568 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 HOXC6P09630 235 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 FCER1AP12319 257 aa17.9■□□□□ 0.46
LIMS3-201ENST00000437679 PRKAR2AP13861 404 aaKnown RBP17.9■□□□□ 0.46
LIMS3-201ENST00000437679 CAPN2P17655 700 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms