RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 USP21Q9UK80 565 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 POTEB2H3BUK9 544 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 LAD1O00515 517 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 ATP2B1P20020 1258 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 PPP2R3AQ06190 1150 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 VPS72Q15906 364 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 ZNF658Q5TYW1 1059 aaPredicted RBP15.47■□□□□ 0.07
COL6A3-207ENST00000433762 TMTC1Q8IUR5 882 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 LRRN4CLQ8ND94 238 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 XDHP47989 1333 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 MYH1P12882 1939 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 CERS3Q8IU89 383 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 WDR24Q96S15 920 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 MAGEF1Q9HAY2 307 aa15.47■□□□□ 0.07
COL6A3-207ENST00000433762 AFMP43652 599 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 NLRP5P59047 1200 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 MECOMQ03112 1051 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 GOLGA8FQ08AF8 430 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 GOLGA8DPQ0D2H9 430 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 RC3H1Q5TC82 1133 aaKnown RBP15.46■□□□□ 0.07
COL6A3-207ENST00000433762 MSL3Q8N5Y2 521 aaKnown RBP15.46■□□□□ 0.07
COL6A3-207ENST00000433762 GOLGA1Q92805 767 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 TCP11L1Q9NUJ3 509 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 NAV1Q8NEY1 1877 aa15.46■□□□□ 0.07
COL6A3-207ENST00000433762 MYH8P13535 1937 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 KIF5CO60282 957 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 PRDM1O75626 825 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 HIBADHP31937 336 aaKnown RBP15.46■□□□□ 0.06
COL6A3-207ENST00000433762 RPS8P62241 208 aaKnown RBP15.46■□□□□ 0.06
COL6A3-207ENST00000433762 RBL2Q08999 1139 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 PAK1Q13153 545 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 KCNB1Q14721 858 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 ZNF174Q15697 407 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 CEP112Q8N8E3 955 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 UBXN6Q9BZV1 441 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 TAOK2Q9UL54 1235 aa15.46■□□□□ 0.06
COL6A3-207ENST00000433762 H7C1D1 291 aa15.45■□□□□ 0.06
COL6A3-207ENST00000433762 TEX33O43247 280 aa15.45■□□□□ 0.06
COL6A3-207ENST00000433762 TUBBP07437 444 aa15.45■□□□□ 0.06
COL6A3-207ENST00000433762 CCDC148Q8NFR7 591 aa15.45■□□□□ 0.06
COL6A3-207ENST00000433762 SBF2Q86WG5 1849 aa15.45■□□□□ 0.06
COL6A3-207ENST00000433762 PRPHP41219 470 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 BRD3Q15059 726 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 BLIDQ8IZY5 108 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 C4orf32Q8N8J7 132 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 LZTS2Q9BRK4 669 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 CUEDC2Q9H467 287 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 PCDHA4Q9UN74 947 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 AFF2P51816 1311 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 IRS2Q9Y4H2 1338 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 CYP2D7A0A087X1C5 515 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 GYPCP04921 128 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 GRM4Q14833 912 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 RCSD1Q6JBY9 416 aa15.44■□□□□ 0.06
COL6A3-207ENST00000433762 NOC3LQ8WTT2 800 aaKnown RBP15.44■□□□□ 0.06
COL6A3-207ENST00000433762 A0A1W2PQC6 194 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CCDC151A5D8V7 595 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 M0R2N6 131 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 WNT7AO00755 349 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 PPP1R2P41236 205 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 COPB1P53618 953 aaKnown RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 ORC2Q13416 577 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 KRT31Q15323 416 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 HSP90AA4PQ58FG1 418 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CYP26C1Q6V0L0 522 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 RAD9BQ6WBX8 426 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 SRGAP1Q7Z6B7 1085 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CCDC12Q8WUD4 166 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 HNRNPLLQ8WVV9 542 aaKnown RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CCSER1Q9C0I3 900 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 MRPL44Q9H9J2 332 aaKnown RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 MKRN1Q9UHC7 482 aaKnown RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CDC23Q9UJX2 597 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 TSPY2A6NKD2 308 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 HOXA7P31268 230 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 TCP11X2Q5H9J9 407 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 KLHL10Q6JEL2 608 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CC2D1AQ6P1N0 951 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 PIK3AP1Q6ZUJ8 805 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 C3orf67Q6ZVT6 689 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 ZNF771Q7L3S4 317 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CELF1Q92879 486 aaKnown RBP15.43■□□□□ 0.06
COL6A3-207ENST00000433762 NLRP3Q96P20 1036 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 KAT14Q9H8E8 782 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 NARFQ9UHQ1 456 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 CTNND2Q9UQB3 1225 aa15.43■□□□□ 0.06
COL6A3-207ENST00000433762 SOWAHDA6NJG2 315 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 RPN1P04843 607 aaKnown RBP15.42■□□□□ 0.06
COL6A3-207ENST00000433762 EEF1GP26641 437 aaKnown RBP15.42■□□□□ 0.06
COL6A3-207ENST00000433762 FAM98CQ17RN3 349 aaKnown RBP15.42■□□□□ 0.06
COL6A3-207ENST00000433762 RRAGBQ5VZM2 374 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 WWC2Q6AWC2 1192 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 ZNF662Q6ZS27 426 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 ACSBG1Q96GR2 724 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 ARFGAP3Q9NP61 516 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 TNRC6CQ9HCJ0 1690 aaKnown RBP15.42■□□□□ 0.06
COL6A3-207ENST00000433762 DDX60LQ5H9U9 1706 aaKnown RBP15.42■□□□□ 0.06
COL6A3-207ENST00000433762 PLA2G4AP47712 749 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 GSTO1P78417 241 aa15.42■□□□□ 0.06
COL6A3-207ENST00000433762 C12orf60Q5U649 245 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms