RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ASCC2Q9H1I8 757 aaPredicted RBP14.62□□□□□ -0.07
USP40-205ENST00000430158 RPAP3Q9H6T3 665 aaPredicted RBP14.62□□□□□ -0.07
USP40-205ENST00000430158 BAZ2BQ9UIF8 2168 aaKnown RBP14.62□□□□□ -0.07
USP40-205ENST00000430158 STX8Q9UNK0 236 aa14.62□□□□□ -0.07
USP40-205ENST00000430158 TNKSO95271 1327 aa14.62□□□□□ -0.07
USP40-205ENST00000430158 USP17L15C9J2P7 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L13C9JLJ4 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L11C9JVI0 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L18D6R9N7 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L22D6RA61 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L17D6RBQ6 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L19D6RCP7 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L20D6RJB6 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 WDR46O15213 610 aaKnown RBP14.61□□□□□ -0.07
USP40-205ENST00000430158 TLR2O60603 784 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 SNHG28P0DPA3 235 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 HSPA8P11142 646 aaKnown RBP14.61□□□□□ -0.07
USP40-205ENST00000430158 BCRP11274 1271 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 ZKSCAN1P17029 563 aaPredicted RBP14.61□□□□□ -0.07
USP40-205ENST00000430158 USP17L24Q0WX57 530 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 KRT32Q14532 448 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 TAF1CQ15572 869 aaPredicted RBP14.61□□□□□ -0.07
USP40-205ENST00000430158 SLFN13Q68D06 897 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 C17orf99Q6UX52 265 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 LBX2Q6XYB7 198 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 RALYLQ86SE5 291 aaKnown RBP14.61□□□□□ -0.07
USP40-205ENST00000430158 IQCA1Q86XH1 822 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 GMCL1Q96IK5 515 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 NEK1Q96PY6 1258 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 NUP88Q99567 741 aaPredicted RBP14.61□□□□□ -0.07
USP40-205ENST00000430158 GOPCQ9HD26 462 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 ADAMTS5Q9UNA0 930 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 WDR19Q8NEZ3 1342 aa14.61□□□□□ -0.07
USP40-205ENST00000430158 SH2B2O14492 632 aaPredicted RBP14.6□□□□□ -0.07
USP40-205ENST00000430158 PRC1O43663 620 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 MCM5P33992 734 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 CAP1Q01518 475 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 FAM83BQ5T0W9 1011 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 DHX32Q7L7V1 743 aaKnown RBP14.6□□□□□ -0.07
USP40-205ENST00000430158 TM6SF1Q9BZW5 370 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 LY9Q9HBG7 655 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 TSKSQ9UJT2 592 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 A0A0G2JMZ2 1700 aa14.6□□□□□ -0.07
USP40-205ENST00000430158 COL11A1P12107 1806 aaPredicted RBP14.59□□□□□ -0.07
USP40-205ENST00000430158 SPDYE16A6NNV3 312 aaPredicted RBP14.59□□□□□ -0.07
USP40-205ENST00000430158 IFIT3O14879 490 aaKnown RBP14.59□□□□□ -0.07
USP40-205ENST00000430158 CNMDO75829 334 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 CPA1P15085 419 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 MCCP23508 829 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 HERVK_113P62684 666 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 PABPC4Q13310 644 aaKnown RBP eCLIP14.59□□□□□ -0.07
USP40-205ENST00000430158 FBXL16Q8N461 479 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 PARK7Q99497 189 aaKnown RBP14.59□□□□□ -0.07
USP40-205ENST00000430158 UBAC1Q9BSL1 405 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 ZFYVE28Q9HCC9 887 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 ZSWIM6Q9HCJ5 1215 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 TXNRD2Q9NNW7 524 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 FBXO28Q9NVF7 368 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 RBPJLQ9UBG7 517 aa14.59□□□□□ -0.07
USP40-205ENST00000430158 GPR25O00155 361 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 PEX10O60683 326 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 PLA2G6O60733 806 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 EIF5BO60841 1220 aaKnown RBP14.58□□□□□ -0.08
USP40-205ENST00000430158 C7P10643 843 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 PDHBP11177 359 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 OSBPP22059 807 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 LIFRP42702 1097 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 ANAPC15P60006 121 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 COG2Q14746 738 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 BTNL9Q6UXG8 535 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 PNMA1Q8ND90 353 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 DCAF4Q8WV16 495 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 SLC39A7Q92504 469 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 TMEM87BQ96K49 555 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 TCEANC2Q96MN5 208 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 JAKMIP1Q96N16 626 aaKnown RBP14.58□□□□□ -0.08
USP40-205ENST00000430158 KIF2CQ99661 725 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 LRRC2Q9BYS8 371 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 AGXT2Q9BYV1 514 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 BACH2Q9BYV9 841 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 MORF4L1Q9UBU8 362 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 PNMA3Q9UL41 463 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 MYPNQ86TC9 1320 aa14.58□□□□□ -0.08
USP40-205ENST00000430158 HMGB1P09429 215 aaKnown RBP14.57□□□□□ -0.08
USP40-205ENST00000430158 BMP3P12645 472 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 RPS6KB1P23443 525 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 TROAPQ12815 778 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 TMEM67Q5HYA8 995 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 IFIT1BQ5T764 474 aaKnown RBP14.57□□□□□ -0.08
USP40-205ENST00000430158 SGMS1Q86VZ5 419 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 REPS2Q8NFH8 660 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 BEGAINQ9BUH8 593 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 CPA4Q9UI42 421 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 PPP1R9AQ9ULJ8 1098 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 ZSWIM8A7E2V4 1837 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 MGAMO43451 1857 aa14.57□□□□□ -0.08
USP40-205ENST00000430158 CTGFP29279 349 aa14.56□□□□□ -0.08
USP40-205ENST00000430158 SLC1A4P43007 532 aa14.56□□□□□ -0.08
USP40-205ENST00000430158 GCLCP48506 637 aaPredicted RBP14.56□□□□□ -0.08
USP40-205ENST00000430158 CTCFP49711 727 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms