RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MTMR6Q9Y217 621 aa19.83■□□□□ 0.76
CCDC28B-202ENST00000421922 SNHG28P0DPA3 235 aa19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 IKQ13123 557 aaPredicted RBP19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 NBPF11Q86T75 865 aa19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 PIBF1Q8WXW3 757 aa19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 GLIS2Q9BZE0 524 aaPredicted RBP19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 TMX2Q9Y320 296 aa19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 CSADQ9Y600 493 aa19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 V9GY48 417 aaPredicted RBP19.82■□□□□ 0.76
CCDC28B-202ENST00000421922 BAZ2BQ9UIF8 2168 aaKnown RBP19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 F5H6K3 240 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 NDUFB10O96000 172 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 F13A1P00488 732 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 HTRA3P83110 453 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 KLRC3Q07444 240 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 GNL2Q13823 731 aaKnown RBP19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 MCTP1Q6DN14 999 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 RASGRP2Q7LDG7 609 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 KLRG1Q96E93 195 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 RRP36Q96EU6 259 aaKnown RBP19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 SPZ1Q9BXG8 430 aa19.81■□□□□ 0.76
CCDC28B-202ENST00000421922 SMARCA1P28370 1054 aa19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 GUCY1B3Q02153 619 aa19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 SAFBQ15424 915 aaKnown RBP eCLIP19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 ZYXQ15942 572 aaKnown RBP19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 KCTD1Q719H9 257 aa19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 LDHDQ86WU2 507 aa19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 ACER1Q8TDN7 264 aa19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 GMCL1Q96IK5 515 aa19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.8■□□□□ 0.76
CCDC28B-202ENST00000421922 BMP3P12645 472 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 ECE1P42892 770 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 FUT2Q10981 343 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 NOL9Q5SY16 702 aaKnown RBP19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 COL13A1Q5TAT6 717 aaPredicted RBP19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 ARMC9Q7Z3E5 817 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 SIAH1Q8IUQ4 282 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 RGS22Q8NE09 1264 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.79■□□□□ 0.762e-6■□□□□ 8.3
CCDC28B-202ENST00000421922 RBM46Q8TBY0 533 aaKnown RBP19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 ZKSCAN4Q969J2 545 aaPredicted RBP19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 VCPKMTQ9H867 229 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 FZD1Q9UP38 647 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 ZDHHC9Q9Y397 364 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 OTOFQ9HC10 1997 aa19.79■□□□□ 0.76
CCDC28B-202ENST00000421922 hCG_1642624A0A1W2PR95 340 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 A0A1W2PRG0 241 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 GOLGA6L22H0YM25 854 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 SCG2P13521 617 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 USP14P54578 494 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 MAP3K9P80192 1104 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 MAP1SQ66K74 1059 aaPredicted RBP19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 CCDC84Q86UT8 332 aaPredicted RBP19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 FERMT3Q86UX7 667 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 HOMER1Q86YM7 354 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 FBXO18Q8NFZ0 1043 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 VAT1LQ9HCJ6 419 aa19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.78■□□□□ 0.76
CCDC28B-202ENST00000421922 USP2O75604 605 aaPredicted RBP19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 PFKFB3Q16875 520 aaPredicted RBP19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 KRT40Q6A162 431 aa19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 SPICE1Q8N0Z3 855 aa19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 JMYQ8N9B5 988 aa19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 AIFM3Q96NN9 605 aa19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 UBA5Q9GZZ9 404 aa19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 ZSCAN16Q9H4T2 348 aaPredicted RBP19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 BRMS1Q9HCU9 246 aa19.77■□□□□ 0.76
CCDC28B-202ENST00000421922 USP17L10C9JJH3 530 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 PTPRAP18433 802 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 DLK2Q6UY11 383 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 CCDC12Q8WUD4 166 aaPredicted RBP19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 LPAR1Q92633 364 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 ZNF408Q9H9D4 720 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 POTEIP0CG38 1075 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 POTEJP0CG39 1038 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 OTUD7BQ6GQQ9 843 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 HEATR3Q7Z4Q2 680 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 ANKRD13AQ8IZ07 590 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 ZNF280CQ8ND82 737 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 CCDC148Q8NFR7 591 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 NUP88Q99567 741 aaPredicted RBP19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 WDR18Q9BV38 432 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 KIAA1683Q9H0B3 1180 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 CPVLQ9H3G5 476 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 RIOX1Q9H6W3 641 aa19.76■□□□□ 0.75
CCDC28B-202ENST00000421922 MYH15Q9Y2K3 1946 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 TMEM232C9JQI7 657 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 STAT2P52630 851 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 MTMR2Q13614 643 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 VGLL4Q14135 290 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 PKN1Q16512 942 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 FOXD4L6Q3SYB3 417 aaPredicted RBP19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 FAM83BQ5T0W9 1011 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 TTBK2Q6IQ55 1244 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 FOXD4L3Q6VB84 417 aaPredicted RBP19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 VPS54Q9P1Q0 977 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 ZHX2Q9Y6X8 837 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 PHIPQ8WWQ0 1821 aa19.75■□□□□ 0.75
CCDC28B-202ENST00000421922 PAPPA2Q9BXP8 1791 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 TRIM75PA6NK02 468 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms