RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 MCM4P33991 863 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 KRT85P78386 507 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 SAFBQ15424 915 aaKnown RBP eCLIP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 CCDC96Q2M329 555 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 ABCB5Q2M3G0 1257 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 CERKLQ49MI3 558 aaPredicted RBP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 ASPRV1Q53RT3 343 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 CLEC17AQ6ZS10 378 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 LRRC47Q8N1G4 583 aaKnown RBP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 FANCBQ8NB91 859 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 NKX2-3Q8TAU0 364 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 ANKS1AQ92625 1134 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 CEP95Q96GE4 821 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 PRMT6Q96LA8 375 aaPredicted RBP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 LZTS2Q9BRK4 669 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 ALG1Q9BT22 464 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 ZSCAN16Q9H4T2 348 aaPredicted RBP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 SH2D4AQ9H788 454 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 DNAJC18Q9H819 358 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 BRMS1Q9HCU9 246 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 CABP5Q9NP86 173 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 ISY1Q9ULR0 285 aaKnown RBP6.91□□□□□ -1.3
HMGB3-202ENST00000419110 PPP2R3BQ9Y5P8 575 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 PITPNM2Q9BZ72 1349 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 MYH7BA7E2Y1 1941 aa6.91□□□□□ -1.3
HMGB3-202ENST00000419110 IGKV6D-41A0A0C4DH26 115 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 FAM196BA6NMK8 535 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 FIBPO43427 364 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 GRIN3BO60391 1043 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 MBD3O95983 291 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 PARP1P09874 1014 aaKnown RBP6.9□□□□□ -1.3
HMGB3-202ENST00000419110 CDC27P30260 824 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 PRELPP51888 382 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 ATP2B2Q01814 1243 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 TROAPQ12815 778 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 GPR162Q16538 588 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 NBPF9Q3BBW0 867 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 TBC1D10BQ4KMP7 808 aaPredicted RBP6.9□□□□□ -1.3
HMGB3-202ENST00000419110 RBM26Q5T8P6 1007 aaKnown RBP6.9□□□□□ -1.3
HMGB3-202ENST00000419110 C9orf131Q5VYM1 1079 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 DCAF15Q66K64 600 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 MCTP1Q6DN14 999 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 RCSD1Q6JBY9 416 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 BRAPQ7Z569 592 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 FERMT3Q86UX7 667 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 FOXP4Q8IVH2 680 aaPredicted RBP6.9□□□□□ -1.3
HMGB3-202ENST00000419110 CCDC148Q8NFR7 591 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 PHKBQ93100 1093 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 TMEM47Q9BQJ4 181 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.9□□□□□ -1.3
HMGB3-202ENST00000419110 ARHGEF10LQ9HCE6 1279 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 MTMR4Q9NYA4 1195 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 GGA3Q9NZ52 723 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 GPRC5DQ9NZD1 345 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 SEC63Q9UGP8 760 aaKnown RBP6.9□□□□□ -1.3
HMGB3-202ENST00000419110 CNOT7Q9UIV1 285 aaKnown RBP6.9□□□□□ -1.3
HMGB3-202ENST00000419110 ZBTB21Q9ULJ3 1066 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 MTMR7Q9Y216 660 aa6.9□□□□□ -1.3
HMGB3-202ENST00000419110 SSC5DA1L4H1 1573 aa6.9□□□□□ -1.31
HMGB3-202ENST00000419110 LOXHD1Q8IVV2 1947 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 GOLGB1Q14789 3259 aaKnown RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 SHTN1A0MZ66 631 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 hCG_1984214I3L0E3 225 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ARHGAP33O14559 1287 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 GDF11O95390 407 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 PLEKHA8P1O95397 391 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ADD1P35611 737 aaKnown RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 RESTQ13127 1097 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 NTRK3Q16288 839 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 GPATCH4Q5T3I0 446 aaKnown RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 SH3BP5LQ7L8J4 393 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 METTL16Q86W50 562 aaKnown RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 CLEC10AQ8IUN9 316 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ZFPM1Q8IX07 1006 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 FAM177A1Q8N128 213 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ZNF713Q8N859 430 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 TRPM4Q8TD43 1214 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 CCDC12Q8WUD4 166 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 DCAF4Q8WV16 495 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ZNF396Q96N95 335 aaPredicted RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ANP32EQ9BTT0 268 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 SPZ1Q9BXG8 430 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 TMEM39BQ9GZU3 492 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 KANSL2Q9H9L4 492 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 IL17RBQ9NRM6 502 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ADARB2Q9NS39 739 aaKnown RBP6.89□□□□□ -1.31
HMGB3-202ENST00000419110 GINM1Q9NU53 330 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 HACL1Q9UJ83 578 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 SYNPO2Q9UMS6 1093 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 ZDHHC9Q9Y397 364 aa6.89□□□□□ -1.31
HMGB3-202ENST00000419110 PRPF3O43395 683 aaKnown RBP6.88□□□□□ -1.31
HMGB3-202ENST00000419110 PPFIA3O75145 1194 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 GH2P01242 217 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 ASNSP08243 561 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 PDHBP11177 359 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 SCG2P13521 617 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 CALML3P27482 149 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 NOVP48745 357 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 GUCY1B3Q02153 619 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 RASA3Q14644 834 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms