RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FRMPD3Q5JV73 1810 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 MYH7P12883 1935 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 DNAH12Q6ZR08 3092 aa13.88□□□□□ -0.19
USP4-204ENST00000416417 RNF113AO15541 343 aaKnown RBP13.87□□□□□ -0.19
USP4-204ENST00000416417 STRNO43815 780 aa13.87□□□□□ -0.19
USP4-204ENST00000416417 PRDM1O75626 825 aa13.87□□□□□ -0.19
USP4-204ENST00000416417 BMP8BP34820 402 aa13.87□□□□□ -0.19
USP4-204ENST00000416417 SLC4A3P48751 1232 aa13.87□□□□□ -0.19
USP4-204ENST00000416417 Q7L0L9 218 aa13.87□□□□□ -0.19
USP4-204ENST00000416417 MB21D1Q8N884 522 aa13.87□□□□□ -0.19
USP4-204ENST00000416417 CHMP4CQ96CF2 233 aa13.87□□□□□ -0.19
USP4-204ENST00000416417 ARPP21Q9UBL0 812 aaPredicted RBP13.87□□□□□ -0.19
USP4-204ENST00000416417 A0A1W2PPC1 479 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 GPAA1O43292 621 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 APPP05067 770 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 OLFML2BQ68BL8 750 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 APPBP2Q92624 585 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 MAML3Q96JK9 1138 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 MROH8Q9H579 483 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 MKNK2Q9HBH9 465 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 LAMA3Q16787 3333 aa13.86□□□□□ -0.19
USP4-204ENST00000416417 VWA5AO00534 786 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 FCER1AP12319 257 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 TAL1P17542 331 aaPredicted RBP13.85□□□□□ -0.19
USP4-204ENST00000416417 TDO2P48775 406 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 SBK1Q52WX2 424 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 FERMT2Q96AC1 680 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 GPATCH3Q96I76 525 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 MMP19Q99542 508 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 GOPCQ9HD26 462 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 CLIP2Q9UDT6 1046 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 PPP1R9AQ9ULJ8 1098 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 ADAMTS5Q9UNA0 930 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 ATP11BQ9Y2G3 1177 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 ZNF236Q9UL36 1845 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 STAT3P40763 770 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 RTP1P59025 263 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 FAM47AQ5JRC9 791 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 TDHQ8IZJ6 230 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 REPS2Q8NFH8 660 aa13.85□□□□□ -0.19
USP4-204ENST00000416417 LENG1Q96BZ8 264 aaPredicted RBP13.85□□□□□ -0.19
USP4-204ENST00000416417 COL11A1P12107 1806 aaPredicted RBP13.84□□□□□ -0.19
USP4-204ENST00000416417 PARP14Q460N5 1801 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 F5H6K3 240 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 DNM1LO00429 736 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 SEPT4O43236 478 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 MSCO60682 206 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 SLC25A27O95847 323 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 NDUFB10O96000 172 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 KLRC3Q07444 240 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 RIOX2Q8IUF8 465 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 PI4K2BQ8TCG2 481 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 ZNF214Q9UL59 606 aaPredicted RBP13.84□□□□□ -0.19
USP4-204ENST00000416417 RIPK3Q9Y572 518 aa13.84□□□□□ -0.19
USP4-204ENST00000416417 ADCYAP1R1P41586 468 aa13.83□□□□□ -0.2
USP4-204ENST00000416417 CCDC129Q6ZRS4 1044 aa13.83□□□□□ -0.2
USP4-204ENST00000416417 IFNL3Q8IZI9 196 aa13.83□□□□□ -0.2
USP4-204ENST00000416417 ABRAQ8N0Z2 381 aa13.83□□□□□ -0.2
USP4-204ENST00000416417 LRRC47Q8N1G4 583 aaKnown RBP13.83□□□□□ -0.2
USP4-204ENST00000416417 FSD1Q9BTV5 496 aa13.83□□□□□ -0.2
USP4-204ENST00000416417 SLC5A4Q9NY91 659 aa13.83□□□□□ -0.2
USP4-204ENST00000416417 NYAP2Q9P242 653 aa13.83□□□□□ -0.2
USP4-204ENST00000416417 ROBO3Q96MS0 1386 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 IGKV6D-41A0A0C4DH26 115 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 KBTBD13C9JR72 458 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 PGK1P00558 417 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 KCTD2Q14681 263 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 LRRC41Q15345 812 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 ZNF792Q3KQV3 632 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 TRIM60Q495X7 471 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 SNRNP48Q6IEG0 339 aaKnown RBP13.82□□□□□ -0.2
USP4-204ENST00000416417 GIMAP6Q6P9H5 292 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 SLC39A5Q6ZMH5 540 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 ZNF444Q8N0Y2 327 aaPredicted RBP13.82□□□□□ -0.2
USP4-204ENST00000416417 CPXCR1Q8N123 301 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 DEFB123Q8N688 67 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 ARRDC4Q8NCT1 418 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 KIFC2Q96AC6 838 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 CEP95Q96GE4 821 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 SLF1Q9BQI6 1058 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 RAVER2Q9HCJ3 691 aaKnown RBP13.82□□□□□ -0.2
USP4-204ENST00000416417 INCENPQ9NQS7 918 aa13.82□□□□□ -0.2
USP4-204ENST00000416417 GREB1LQ9C091 1923 aaPredicted RBP13.82□□□□□ -0.2
USP4-204ENST00000416417 PATL2C9JE40 543 aaKnown RBP13.81□□□□□ -0.2
USP4-204ENST00000416417 ZFYP08048 801 aaPredicted RBP13.81□□□□□ -0.2
USP4-204ENST00000416417 CRBNQ96SW2 442 aa13.81□□□□□ -0.2
USP4-204ENST00000416417 TINF2Q9BSI4 451 aa13.81□□□□□ -0.2
USP4-204ENST00000416417 PRDM5Q9NQX1 630 aaPredicted RBP13.81□□□□□ -0.2
USP4-204ENST00000416417 ISY1Q9ULR0 285 aaKnown RBP13.81□□□□□ -0.2
USP4-204ENST00000416417 LRIT3Q3SXY7 679 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 SH3RF1Q7Z6J0 888 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 LBHD1Q9BQE6 289 aaPredicted RBP13.8□□□□□ -0.2
USP4-204ENST00000416417 XPNPEP3Q9NQH7 507 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 MTMR4Q9NYA4 1195 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 TTC41PQ6P2S7 1318 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 ZNF865P0CJ78 1059 aaPredicted RBP13.8□□□□□ -0.2
USP4-204ENST00000416417 GNAT2P19087 354 aa13.8□□□□□ -0.2
USP4-204ENST00000416417 RRP1P56182 461 aaKnown RBP13.8□□□□□ -0.2
USP4-204ENST00000416417 IRX5P78411 483 aaPredicted RBP13.8□□□□□ -0.2
USP4-204ENST00000416417 CTDSPL2Q05D32 466 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms