RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 AMIGO3Q86WK7 504 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 RASGRP4Q8TDF6 673 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 CCDC12Q8WUD4 166 aaPredicted RBP11.2□□□□□ -0.62
SS18-203ENST00000415083 COL24A1Q17RW2 1714 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 LOC102724428A0A0B4J2F2 783 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 CCDC196A0A1B0GTZ2 297 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 KLRC4O43908 158 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 SIK1P57059 783 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 SART3Q15020 963 aaKnown RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 PIK3AP1Q6ZUJ8 805 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 SLC35F6Q8N357 371 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 STAG2Q8N3U4 1231 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 TMEM60Q9H2L4 133 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 PUF60Q9UHX1 559 aaKnown RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 MAPK8IP1Q9UQF2 711 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 ITIH6Q6UXX5 1313 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 OAS2P29728 719 aaKnown RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 MECOMQ03112 1051 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 GRIK5Q16478 980 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 SLC4A8Q2Y0W8 1093 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 BEND6Q5SZJ8 279 aaPredicted RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 KANK3Q6NY19 840 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 WDR59Q6PJI9 974 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 NEK11Q8NG66 645 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 RABGGTAQ92696 567 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 RNF41Q9H4P4 317 aaPredicted RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 DCP1AQ9NPI6 582 aaPredicted RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 ABHD10Q9NUJ1 306 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 ERICH2A1L162 156 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 EXOC5O00471 708 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 N4BP1O75113 896 aaKnown RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 PRDX5P30044 214 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 IGHMBP2P38935 993 aaKnown RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 PRCPP42785 496 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 WWC2Q6AWC2 1192 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 FBXO33Q7Z6M2 555 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 VPS16Q9H269 839 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 TAB2Q9NYJ8 693 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 MKRN1Q9UHC7 482 aaKnown RBP11.19□□□□□ -0.62
SS18-203ENST00000415083 CEP131Q9UPN4 1083 aa11.19□□□□□ -0.62
SS18-203ENST00000415083 CYTH3O43739 400 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 TXLNAP40222 546 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 LONRF2Q1L5Z9 754 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 NOA1Q8NC60 698 aaKnown RBP11.18□□□□□ -0.62
SS18-203ENST00000415083 GPKOWQ92917 476 aaPredicted RBP eCLIP11.18□□□□□ -0.62
SS18-203ENST00000415083 FERMT2Q96AC1 680 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 RAB21Q9UL25 225 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 JAG2Q9Y219 1238 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 DDX60LQ5H9U9 1706 aaKnown RBP11.18□□□□□ -0.62
SS18-203ENST00000415083 CCDC175P0C221 793 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 MCM7P33993 719 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 HNRNPH2P55795 449 aaKnown RBP11.18□□□□□ -0.62
SS18-203ENST00000415083 PFKFB3Q16875 520 aaPredicted RBP11.18□□□□□ -0.62
SS18-203ENST00000415083 SRGAP1Q7Z6B7 1085 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 ZNF507Q8TCN5 953 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 DACH1Q9UI36 760 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 RCCD1A6NED2 376 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 SEMA3EO15041 775 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 CAPN2P17655 700 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 COPB1P53618 953 aaKnown RBP11.18□□□□□ -0.62
SS18-203ENST00000415083 SMC1AQ14683 1233 aaKnown RBP11.18□□□□□ -0.62
SS18-203ENST00000415083 TCP11X2Q5H9J9 407 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 ZNF569Q5MCW4 686 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 LINC00116Q8NCU8 138 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 MSANTD4Q8NCY6 345 aa11.18□□□□□ -0.62
SS18-203ENST00000415083 HOOK1Q9UJC3 728 aaKnown RBP11.18□□□□□ -0.62
SS18-203ENST00000415083 ORC4O43929 436 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 KLK7P49862 253 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 CT47A1Q5JQC4 288 aaPredicted RBP11.17□□□□□ -0.62
SS18-203ENST00000415083 GOLGA6L9A6NEM1 432 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 NRDCO43847 1150 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 SCG2P13521 617 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 USP5P45974 858 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 HERVK_113P62684 666 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 SF3B3Q15393 1217 aaKnown RBP11.17□□□□□ -0.62
SS18-203ENST00000415083 PARP10Q53GL7 1025 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 BSDC1Q9NW68 430 aaPredicted RBP11.17□□□□□ -0.62
SS18-203ENST00000415083 RWDD2AQ9UIY3 292 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 CDC23Q9UJX2 597 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 ZNF831Q5JPB2 1677 aa11.17□□□□□ -0.62
SS18-203ENST00000415083 DDAH1O94760 285 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 USP17L8P0C7I0 530 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 VSNL1P62760 191 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.16□□□□□ -0.62
SS18-203ENST00000415083 CATIPQ7Z7H3 387 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 CCDC24Q8N4L8 307 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 NELFBQ8WX92 580 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 TFCP2L1Q9NZI6 479 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 FLT1P17948 1338 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 CHMP4BP1P59074 171 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 RRAGBQ5VZM2 374 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 GOLGA1Q92805 767 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 TTYH3Q9C0H2 523 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 HDAC6Q9UBN7 1215 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 ZC3H4Q9UPT8 1303 aaKnown RBP11.16□□□□□ -0.62
SS18-203ENST00000415083 NAV1Q8NEY1 1877 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 TTC26A0AVF1 554 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 KCNJ18B7U540 433 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 ATP8B1O43520 1251 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 EDIL3O43854 480 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms