RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 PIBF1Q8WXW3 757 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 CLMNQ96JQ2 1002 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 TRPM7Q96QT4 1865 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 GPCPD1Q9NPB8 672 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 PICK1Q9NRD5 415 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 GINM1Q9NU53 330 aa11.25□□□□□ -0.61
RIF1-202ENST00000414861 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.25□□□□□ -0.61
RIF1-202ENST00000414861 SLC1A4P43007 532 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 MAP3K9P80192 1104 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 SSRP1Q08945 709 aaKnown RBP11.24□□□□□ -0.61
RIF1-202ENST00000414861 TTLL12Q14166 644 aaPredicted RBP11.24□□□□□ -0.61
RIF1-202ENST00000414861 ASPRV1Q53RT3 343 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 FEZ1Q99689 392 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 UBA5Q9GZZ9 404 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 STX6O43752 255 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 IREB2P48200 963 aaKnown RBP11.24□□□□□ -0.61
RIF1-202ENST00000414861 MTMR2Q13614 643 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 PKN1Q16512 942 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 MAP3K11Q16584 847 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 LARP1BQ659C4 914 aaKnown RBP11.24□□□□□ -0.61
RIF1-202ENST00000414861 OTUD7BQ6GQQ9 843 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 DCAF4Q8WV16 495 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 SHISA4Q96DD7 197 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 GMCL1Q96IK5 515 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 RNF26Q9BY78 433 aaPredicted RBP11.24□□□□□ -0.61
RIF1-202ENST00000414861 VCPKMTQ9H867 229 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 ISY1Q9ULR0 285 aaKnown RBP11.24□□□□□ -0.61
RIF1-202ENST00000414861 SYNPO2Q9UMS6 1093 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 MTMR6Q9Y217 621 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 ZHX2Q9Y6X8 837 aa11.24□□□□□ -0.61
RIF1-202ENST00000414861 V9GY48 417 aaPredicted RBP11.24□□□□□ -0.61
RIF1-202ENST00000414861 PARP14Q460N5 1801 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 VPS37CA5D8V6 355 aaPredicted RBP11.23□□□□□ -0.61
RIF1-202ENST00000414861 TRIM75PA6NK02 468 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 SLC16A2P36021 539 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 SPP2Q13103 211 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 TRIM22Q8IYM9 498 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 SPZ1Q9BXG8 430 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 GOPCQ9HD26 462 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 SMCHD1A6NHR9 2005 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 TCHHQ07283 1943 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 PRPF3O43395 683 aaKnown RBP11.23□□□□□ -0.61
RIF1-202ENST00000414861 BRD1O95696 1058 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 GNAQP50148 359 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 GUCY1B3Q02153 619 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 FAM83BQ5T0W9 1011 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 GPATCH4Q5T3I0 446 aaKnown RBP11.23□□□□□ -0.61
RIF1-202ENST00000414861 ALG1Q9BT22 464 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 WDR18Q9BV38 432 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 KIAA1683Q9H0B3 1180 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 ELP3Q9H9T3 547 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 GPBP1L1Q9HC44 474 aaPredicted RBP11.23□□□□□ -0.61
RIF1-202ENST00000414861 CSADQ9Y600 493 aa11.23□□□□□ -0.61
RIF1-202ENST00000414861 DEXIO95424 95 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 ITGBL1O95965 494 aaPredicted RBP11.22□□□□□ -0.61
RIF1-202ENST00000414861 CHADLQ6NUI6 762 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 ZNF280CQ8ND82 737 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 SH2D4AQ9H788 454 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 USP17L10C9JJH3 530 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 KIF3CO14782 793 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 CELF2O95319 508 aaKnown RBP11.22□□□□□ -0.61
RIF1-202ENST00000414861 BMP3P12645 472 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 PDCP20941 246 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 ANKRD13AQ8IZ07 590 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 CHAMP1Q96JM3 812 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 C8orf76Q96K31 380 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 LZTS2Q9BRK4 669 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 RIOX1Q9H6W3 641 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 EMILIN3Q9NT22 766 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 AFG3L2Q9Y4W6 797 aa11.22□□□□□ -0.61
RIF1-202ENST00000414861 RLFQ13129 1914 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 MYH15Q9Y2K3 1946 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 BACE1P56817 501 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 NUCB2P80303 420 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 LDLRAD1Q5T700 205 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 ARMC9Q7Z3E5 817 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 HOMER1Q86YM7 354 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 ADGRF4Q8IZF3 695 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 GPKOWQ92917 476 aaPredicted RBP eCLIP11.21□□□□□ -0.611e-6■■■□□ 17
RIF1-202ENST00000414861 PIGSQ96S52 555 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 AS3MTQ9HBK9 375 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 VAT1LQ9HCJ6 419 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 KIF3AQ9Y496 699 aa11.21□□□□□ -0.61
RIF1-202ENST00000414861 LOC285556D6RIA3 1793 aa11.21□□□□□ -0.62
RIF1-202ENST00000414861 TMEM232C9JQI7 657 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 VCAM1P19320 739 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 HMGCS2P54868 508 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 AKAP17AQ02040 695 aaKnown RBP11.2□□□□□ -0.62
RIF1-202ENST00000414861 PFKFB3Q16875 520 aaPredicted RBP11.2□□□□□ -0.62
RIF1-202ENST00000414861 FERMT3Q86UX7 667 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 FBXO18Q8NFZ0 1043 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 TNPO1Q92973 898 aaKnown RBP11.2□□□□□ -0.62
RIF1-202ENST00000414861 JMJD4Q9H9V9 463 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 FBXO28Q9NVF7 368 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 VPS54Q9P1Q0 977 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 WDR33Q9C0J8 1336 aaKnown RBP11.2□□□□□ -0.62
RIF1-202ENST00000414861 H3BQV1 296 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 ZSCAN22P10073 491 aaPredicted RBP11.2□□□□□ -0.62
RIF1-202ENST00000414861 SCG2P13521 617 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 SMARCA1P28370 1054 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms