RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ZBED4O75132 1171 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 FLOT1O75955 427 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 SGPL1O95470 568 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 HMGCRP04035 888 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 NEFLP07196 543 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 FCER1AP12319 257 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 BMP3P12645 472 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 GJA8P48165 433 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 PRKCZQ05513 592 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 TRDNQ13061 729 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 MAP2K5Q13163 448 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 NMIQ13287 307 aaPredicted RBP7.55□□□□□ -1.2
USP54-202ENST00000413442 SLC4A8Q2Y0W8 1093 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 Q3C1V9 767 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 TKFCQ3LXA3 575 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 MORN1Q5T089 497 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 CASC1Q6TDU7 716 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 CWC27Q6UX04 472 aaKnown RBP7.55□□□□□ -1.2
USP54-202ENST00000413442 GPR142Q7Z601 462 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 RIOX2Q8IUF8 465 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 SLC44A5Q8NCS7 719 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 STAG1Q8WVM7 1258 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 ANKS1AQ92625 1134 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 USP6NLQ92738 828 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 FAM227BQ96M60 508 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP54-202ENST00000413442 ARHGAP39Q9C0H5 1083 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 SPATC1LQ9H0A9 340 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 HMX1Q9NP08 348 aaPredicted RBP7.55□□□□□ -1.2
USP54-202ENST00000413442 PPP1R9AQ9ULJ8 1098 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 CTDP1Q9Y5B0 961 aaPredicted RBP7.55□□□□□ -1.2
USP54-202ENST00000413442 U3KPZ7 1027 aaPredicted RBP7.55□□□□□ -1.2
USP54-202ENST00000413442 RLFQ13129 1914 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 LOC102724159A0A0B4J2E5 919 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 A0A0D9SFI3 127 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 VWA5AO00534 786 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 EPB41L2O43491 1005 aaKnown RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 RANBP6O60518 1105 aaKnown RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 CAPN15O75808 1086 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 CHGBP05060 677 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 CENPBP07199 599 aaPredicted RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 TOP1P11387 765 aaKnown RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 CTGFP29279 349 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 STAT3P40763 770 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 STAT2P52630 851 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 ATP2B2Q01814 1243 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 GRB14Q14449 540 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 PWP2Q15269 919 aaKnown RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 ZYXQ15942 572 aaKnown RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 BMP2KLQ5H9B9 411 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 GPATCH4Q5T3I0 446 aaKnown RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 MFSD14CQ5VZR4 134 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 OLFML2BQ68BL8 750 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 KIAA1211Q6ZU35 1233 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 DPP9Q86TI2 863 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 TMTC2Q8N394 836 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 SAMD3Q8N6K7 520 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 CHST13Q8NET6 341 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 DCAF4Q8WV16 495 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 CEP95Q96GE4 821 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 APBA2Q99767 749 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 SLF1Q9BQI6 1058 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 TEX13BQ9BXU2 312 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 RNF208Q9H0X6 261 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.54□□□□□ -1.2
USP54-202ENST00000413442 PARP14Q460N5 1801 aa7.54□□□□□ -1.2
USP54-202ENST00000413442 FOXP2O15409 715 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 CCL5P13501 91 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 CHMLP26374 656 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 SLC1A4P43007 532 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 KCTD2Q14681 263 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 MAP3K21Q5TCX8 1036 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 SLFN13Q68D06 897 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 BTNL9Q6UXG8 535 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 ZNF467Q7Z7K2 595 aaPredicted RBP7.53□□□□□ -1.2
USP54-202ENST00000413442 MAP4K1Q92918 833 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 PAGR1Q9BTK6 254 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 HTATIP2Q9BUP3 242 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 MOV10L1Q9BXT6 1211 aaKnown RBP7.53□□□□□ -1.2
USP54-202ENST00000413442 CRISPLD2Q9H0B8 497 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 TXNRD2Q9NNW7 524 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 PAK6Q9NQU5 681 aaPredicted RBP7.53□□□□□ -1.2
USP54-202ENST00000413442 BTBD7Q9P203 1132 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 GABRQQ9UN88 632 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 STX8Q9UNK0 236 aa7.53□□□□□ -1.2
USP54-202ENST00000413442 ZNF236Q9UL36 1845 aa7.52□□□□□ -1.2
USP54-202ENST00000413442 ERICH2A1L162 156 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 B4DLN1 442 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 SGSM2O43147 1006 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 CNMDO75829 334 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 NDUFB10O96000 172 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 ZKSCAN1P17029 563 aaPredicted RBP7.52□□□□□ -1.21
USP54-202ENST00000413442 ERCC3P19447 782 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 PDE4AP27815 886 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 MRPL12P52815 198 aaKnown RBP7.52□□□□□ -1.21
USP54-202ENST00000413442 CTDSPL2Q05D32 466 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 SART3Q15020 963 aaKnown RBP7.52□□□□□ -1.21
USP54-202ENST00000413442 SHROOM1Q2M3G4 852 aaPredicted RBP7.52□□□□□ -1.21
USP54-202ENST00000413442 FAM83BQ5T0W9 1011 aa7.52□□□□□ -1.21
USP54-202ENST00000413442 VPS53Q5VIR6 699 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms