RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 IRF5Q13568 498 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 SLFN13Q68D06 897 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 NBPF11Q86T75 865 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 CCAR1Q8IX12 1150 aaKnown RBP24.51■■□□□ 1.51
VSX1-204ENST00000409958 ATG4CQ96DT6 458 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 NUP88Q99567 741 aaPredicted RBP24.51■■□□□ 1.51
VSX1-204ENST00000409958 PORCNQ9H237 461 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 FBXO28Q9NVF7 368 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 PPP1R9AQ9ULJ8 1098 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 ADAMTS5Q9UNA0 930 aa24.51■■□□□ 1.51
VSX1-204ENST00000409958 U3KPZ7 1027 aaPredicted RBP24.51■■□□□ 1.51
VSX1-204ENST00000409958 ESYT1Q9BSJ8 1104 aa24.5■■□□□ 1.51
VSX1-204ENST00000409958 PARP14Q460N5 1801 aa24.5■■□□□ 1.51
VSX1-204ENST00000409958 A0A0G2JMZ2 1700 aa24.5■■□□□ 1.51
VSX1-204ENST00000409958 MAP4K1Q92918 833 aa24.49■■□□□ 1.51
VSX1-204ENST00000409958 GMCL1Q96IK5 515 aa24.49■■□□□ 1.51
VSX1-204ENST00000409958 ZNF333Q96JL9 665 aa24.49■■□□□ 1.51
VSX1-204ENST00000409958 GJD2Q9UKL4 321 aa24.49■■□□□ 1.51
VSX1-204ENST00000409958 GRK4P32298 578 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 SAMD1Q6SPF0 538 aaPredicted RBP24.48■■□□□ 1.51
VSX1-204ENST00000409958 KIAA1211Q6ZU35 1233 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 GPR142Q7Z601 462 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 PLEKHH3Q7Z736 793 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 SLAIN1Q8ND83 568 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 NKX2-3Q8TAU0 364 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 SH3TC2Q8TF17 1288 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 TTC14Q96N46 770 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 SLF1Q9BQI6 1058 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 KRT23Q9C075 422 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 SPATC1LQ9H0A9 340 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 CNNM2Q9H8M5 875 aa24.48■■□□□ 1.51
VSX1-204ENST00000409958 TOP1P11387 765 aaKnown RBP24.47■■□□□ 1.51
VSX1-204ENST00000409958 BMP3P12645 472 aa24.47■■□□□ 1.51
VSX1-204ENST00000409958 PRPF38AQ8NAV1 312 aaKnown RBP24.47■■□□□ 1.51
VSX1-204ENST00000409958 PXYLP1Q8TE99 480 aa24.47■■□□□ 1.51
VSX1-204ENST00000409958 SOCS4Q8WXH5 440 aa24.47■■□□□ 1.51
VSX1-204ENST00000409958 FEM1BQ9UK73 627 aa24.47■■□□□ 1.51
VSX1-204ENST00000409958 B4E1Z4 1266 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 VWA5AO00534 786 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 ADCY3O60266 1144 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 KDM4AO75164 1064 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 CYP21A2P08686 494 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 CCDC178Q5BJE1 867 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 IQCA1Q86XH1 822 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 SHCBP1Q8NEM2 672 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 NUDT12Q9BQG2 462 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 TMEM47Q9BQJ4 181 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 MOV10L1Q9BXT6 1211 aaKnown RBP24.46■■□□□ 1.51
VSX1-204ENST00000409958 CWC22Q9HCG8 908 aaKnown RBP24.46■■□□□ 1.51
VSX1-204ENST00000409958 CENPFP49454 3210 aa24.46■■□□□ 1.51
VSX1-204ENST00000409958 MCCP23508 829 aa24.45■■□□□ 1.5
VSX1-204ENST00000409958 SLC1A4P43007 532 aa24.45■■□□□ 1.5
VSX1-204ENST00000409958 TMEM132BQ14DG7 1078 aa24.45■■□□□ 1.5
VSX1-204ENST00000409958 RCSD1Q6JBY9 416 aa24.45■■□□□ 1.5
VSX1-204ENST00000409958 CASC1Q6TDU7 716 aa24.45■■□□□ 1.5
VSX1-204ENST00000409958 LSG1Q9H089 658 aaKnown RBP24.45■■□□□ 1.5
VSX1-204ENST00000409958 CDC45O75419 566 aa24.44■■□□□ 1.5
VSX1-204ENST00000409958 DGKHQ86XP1 1220 aa24.44■■□□□ 1.5
VSX1-204ENST00000409958 ZSWIM5Q9P217 1185 aa24.44■■□□□ 1.5
VSX1-204ENST00000409958 RBM8AQ9Y5S9 174 aaKnown RBP24.44■■□□□ 1.5
VSX1-204ENST00000409958 MYCP01106 439 aaPredicted RBP24.43■■□□□ 1.5
VSX1-204ENST00000409958 PLS1Q14651 629 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 MORN1Q5T089 497 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 WDR78Q5VTH9 848 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 REPS2Q8NFH8 660 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 DCAF4Q8WV16 495 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 USP6NLQ92738 828 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 ZKSCAN3Q9BRR0 538 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 PLXNB2O15031 1838 aa24.43■■□□□ 1.5
VSX1-204ENST00000409958 KIAA0100Q14667 2235 aaKnown RBP24.43■■□□□ 1.5
VSX1-204ENST00000409958 TMEM232C9JQI7 657 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 PLA2G6O60733 806 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 SLC25A27O95847 323 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 XRCC5P13010 732 aaKnown RBP24.42■■□□□ 1.5
VSX1-204ENST00000409958 ELNP15502 786 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 ERCC3P19447 782 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 PTPREP23469 700 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 STAT2P52630 851 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 TRDNQ13061 729 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 FAM160B2Q86V87 743 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 CHURC1Q8WUH1 139 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 KIFC2Q96AC6 838 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 MROH8Q9H579 483 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 ZNF214Q9UL59 606 aaPredicted RBP24.42■■□□□ 1.5
VSX1-204ENST00000409958 IVNS1ABPQ9Y6Y0 642 aa24.42■■□□□ 1.5
VSX1-204ENST00000409958 SLC15A5A6NIM6 579 aa24.41■■□□□ 1.5
VSX1-204ENST00000409958 CYP2B6P20813 491 aa24.41■■□□□ 1.5
VSX1-204ENST00000409958 STAT3P40763 770 aa24.41■■□□□ 1.5
VSX1-204ENST00000409958 RGS2P41220 211 aa24.41■■□□□ 1.5
VSX1-204ENST00000409958 UBXN2AP68543 259 aa24.41■■□□□ 1.5
VSX1-204ENST00000409958 ANKS1AQ92625 1134 aa24.41■■□□□ 1.5
VSX1-204ENST00000409958 ZSCAN10Q96SZ4 725 aaPredicted RBP24.41■■□□□ 1.5
VSX1-204ENST00000409958 ANO2Q9NQ90 1003 aa24.41■■□□□ 1.5
VSX1-204ENST00000409958 BIN2Q9UBW5 565 aaPredicted RBP24.41■■□□□ 1.5
VSX1-204ENST00000409958 ISY1Q9ULR0 285 aaKnown RBP24.41■■□□□ 1.5
VSX1-204ENST00000409958 COL11A1P12107 1806 aaPredicted RBP24.41■■□□□ 1.5
VSX1-204ENST00000409958 STRNO43815 780 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 ZBED4O75132 1171 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 FDX1P10109 184 aa24.4■■□□□ 1.5
VSX1-204ENST00000409958 COPB2P35606 906 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms