RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SCARA3Q6AZY7 606 aa8.8□□□□□ -1
USP40-202ENST00000409945 ZSCAN1Q8NBB4 408 aa8.8□□□□□ -1
USP40-202ENST00000409945 NALCNQ8IZF0 1738 aa8.8□□□□□ -1
USP40-202ENST00000409945 EIF3AQ14152 1382 aaKnown RBP8.8□□□□□ -1
USP40-202ENST00000409945 MST1RQ04912 1400 aa8.8□□□□□ -1
USP40-202ENST00000409945 TIAF1O95411 115 aa8.8□□□□□ -1
USP40-202ENST00000409945 EIF6P56537 245 aaKnown RBP8.8□□□□□ -1
USP40-202ENST00000409945 TRIM28Q13263 835 aaKnown RBP8.8□□□□□ -1
USP40-202ENST00000409945 TTLL4Q14679 1199 aa8.8□□□□□ -1
USP40-202ENST00000409945 BMS1Q14692 1282 aaKnown RBP8.8□□□□□ -1
USP40-202ENST00000409945 OVOS1Q6IE37 1185 aa8.8□□□□□ -1
USP40-202ENST00000409945 BRINP3Q76B58 766 aa8.8□□□□□ -1
USP40-202ENST00000409945 HDXQ7Z353 690 aa8.8□□□□□ -1
USP40-202ENST00000409945 LRRC59Q96AG4 307 aaKnown RBP8.8□□□□□ -1
USP40-202ENST00000409945 RAD18Q9NS91 495 aa8.8□□□□□ -1
USP40-202ENST00000409945 CHURC1-FNTBB4DL54 471 aa8.79□□□□□ -1
USP40-202ENST00000409945 ZBTB37Q5TC79 503 aa8.79□□□□□ -1
USP40-202ENST00000409945 IGF2-ASQ6U949 168 aa8.79□□□□□ -1
USP40-202ENST00000409945 WAPLQ7Z5K2 1190 aa8.79□□□□□ -1
USP40-202ENST00000409945 PRAM1Q96QH2 718 aa8.79□□□□□ -1
USP40-202ENST00000409945 ZSWIM4Q9H7M6 989 aa8.79□□□□□ -1
USP40-202ENST00000409945 PRKAG3Q9UGI9 489 aa8.79□□□□□ -1
USP40-202ENST00000409945 KLHL3Q9UH77 587 aa8.79□□□□□ -1
USP40-202ENST00000409945 ACTL7BQ9Y614 415 aa8.79□□□□□ -1
USP40-202ENST00000409945 CDC42BPGQ6DT37 1551 aa8.79□□□□□ -1
USP40-202ENST00000409945 F8W735 103 aaPredicted RBP8.78□□□□□ -1
USP40-202ENST00000409945 SMARCA5O60264 1052 aaPredicted RBP8.78□□□□□ -1
USP40-202ENST00000409945 PLCG1P19174 1290 aa8.78□□□□□ -1
USP40-202ENST00000409945 PREPP48147 710 aa8.78□□□□□ -1
USP40-202ENST00000409945 ID3Q02535 119 aa8.78□□□□□ -1
USP40-202ENST00000409945 C1orf167Q5SNV9 1468 aa8.78□□□□□ -1
USP40-202ENST00000409945 AHDC1Q5TGY3 1603 aaPredicted RBP8.78□□□□□ -1
USP40-202ENST00000409945 MEX3CQ5U5Q3 659 aaKnown RBP8.78□□□□□ -1
USP40-202ENST00000409945 SPATA31A6Q5VVP1 1343 aa8.78□□□□□ -1
USP40-202ENST00000409945 NUTM2GQ5VZR2 741 aa8.78□□□□□ -1
USP40-202ENST00000409945 ASXL1Q8IXJ9 1541 aa8.78□□□□□ -1
USP40-202ENST00000409945 C2CD4AQ8NCU7 369 aaPredicted RBP8.78□□□□□ -1
USP40-202ENST00000409945 TONSLQ96HA7 1378 aa8.78□□□□□ -1
USP40-202ENST00000409945 DLC1Q96QB1 1528 aa8.78□□□□□ -1
USP40-202ENST00000409945 STRIP2Q9ULQ0 834 aa8.78□□□□□ -1
USP40-202ENST00000409945 SNCAIPQ9Y6H5 919 aa8.78□□□□□ -1
USP40-202ENST00000409945 NPHP3Q7Z494 1330 aa8.78□□□□□ -1
USP40-202ENST00000409945 SLC22A31A6NKX4 558 aa8.78□□□□□ -1
USP40-202ENST00000409945 B2RBV5 119 aa8.78□□□□□ -1
USP40-202ENST00000409945 ERVK-24P63145 666 aa8.78□□□□□ -1
USP40-202ENST00000409945 ST7Q9NRC1 585 aa8.78□□□□□ -1
USP40-202ENST00000409945 TJP2Q9UDY2 1190 aa8.78□□□□□ -1
USP40-202ENST00000409945 MED1Q15648 1581 aaPredicted RBP8.77□□□□□ -1.01
USP40-202ENST00000409945 FAM221BA6H8Z2 402 aa8.77□□□□□ -1.01
USP40-202ENST00000409945 CCDC85CA6NKD9 419 aa8.77□□□□□ -1.01
USP40-202ENST00000409945 PGRP06401 933 aa8.77□□□□□ -1.01
USP40-202ENST00000409945 ETF1P62495 437 aaKnown RBP8.77□□□□□ -1.01
USP40-202ENST00000409945 RAB33AQ14088 237 aa8.77□□□□□ -1.01
USP40-202ENST00000409945 SAFB2Q14151 953 aaKnown RBP eCLIP8.77□□□□□ -1.01
USP40-202ENST00000409945 C12orf50Q8NA57 414 aaPredicted RBP8.77□□□□□ -1.01
USP40-202ENST00000409945 UBL7Q96S82 380 aaPredicted RBP8.77□□□□□ -1.01
USP40-202ENST00000409945 HIRIP3Q9BW71 556 aaPredicted RBP8.77□□□□□ -1.01
USP40-202ENST00000409945 RNF208Q9H0X6 261 aa8.77□□□□□ -1.01
USP40-202ENST00000409945 KIAA1210Q9ULL0 1709 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 SOX4Q06945 474 aaPredicted RBP8.76□□□□□ -1.01
USP40-202ENST00000409945 ISL2Q96A47 359 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 ATG4CQ96DT6 458 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 WNT10AQ9GZT5 417 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 OSBPL2Q9H1P3 480 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 SUGCTQ9HAC7 445 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 MEGF11A6BM72 1044 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 DYNC1LI2O43237 492 aaPredicted RBP8.76□□□□□ -1.01
USP40-202ENST00000409945 SLFN14P0C7P3 912 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 DYMQ7RTS9 669 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 RBBP8NLQ8NC74 664 aaPredicted RBP8.76□□□□□ -1.01
USP40-202ENST00000409945 SMG8Q8ND04 991 aaKnown RBP8.76□□□□□ -1.01
USP40-202ENST00000409945 TMEM40Q8WWA1 233 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 SIN3AQ96ST3 1273 aa8.76□□□□□ -1.01
USP40-202ENST00000409945 MRPL18Q9H0U6 180 aaKnown RBP8.76□□□□□ -1.01
USP40-202ENST00000409945 LTBP3Q9NS15 1303 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 MEIS3P2A8K0S8 358 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 PPP2R5EQ16537 467 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 ARSHQ5FYA8 562 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 TTC6Q86TZ1 520 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 CKAP2LQ8IYA6 745 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 SLC9A7Q96T83 725 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 LGR6Q9HBX8 967 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 PCDHB10Q9UN67 800 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 COL16A1Q07092 1604 aaPredicted RBP8.75□□□□□ -1.01
USP40-202ENST00000409945 NHSL1Q5SYE7 1610 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 PLEKHH1Q9ULM0 1364 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 ADGRB1O14514 1584 aa8.75□□□□□ -1.01
USP40-202ENST00000409945 A0A1W2PQH9 124 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 NOS3P29474 1203 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 ORAI2Q96SN7 254 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 GMIPQ9P107 970 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 SLBPQ14493 270 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP40-202ENST00000409945 RASA3Q14644 834 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 CDPF1Q6NVV7 123 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 CRBNQ96SW2 442 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 GSX1Q9H4S2 264 aaPredicted RBP8.74□□□□□ -1.01
USP40-202ENST00000409945 USP21Q9UK80 565 aa8.74□□□□□ -1.01
USP40-202ENST00000409945 ROCK2O75116 1388 aaKnown RBP8.73□□□□□ -1.01
USP40-202ENST00000409945 KIF1AQ12756 1690 aa8.73□□□□□ -1.01
USP40-202ENST00000409945 SHPRHQ149N8 1683 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms