RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MORC3Q14149 939 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 RCSD1Q6JBY9 416 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 IQUBQ8NA54 791 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 EYA3Q99504 573 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 ITGB4P16144 1822 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 TRIM37O94972 964 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 BAG3O95817 575 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 FILIP1LQ4L180 1135 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 ZSCAN29Q8IWY8 852 aaPredicted RBP15.15■□□□□ 0.02
VPS54-203ENST00000409558 ANKRD2Q9GZV1 360 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 RBM28Q9NW13 759 aaKnown RBP15.15■□□□□ 0.02
VPS54-203ENST00000409558 XIRP1Q702N8 1843 aaKnown RBP15.15■□□□□ 0.02
VPS54-203ENST00000409558 TXLNAP40222 546 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 SNAP25P60880 206 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 TRMT1LQ7Z2T5 733 aaKnown RBP15.15■□□□□ 0.02
VPS54-203ENST00000409558 NELFBQ8WX92 580 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 SLF1Q9BQI6 1058 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 TMEM47Q9BQJ4 181 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 DNA2P51530 1060 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 UBXN1Q04323 297 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 WWC2Q6AWC2 1192 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 DTHD1Q6ZMT9 781 aa15.15■□□□□ 0.02
VPS54-203ENST00000409558 FANCGO15287 622 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 CTIFO43310 598 aaKnown RBP15.14■□□□□ 0.01
VPS54-203ENST00000409558 TC2NQ8N9U0 490 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 TRIM47Q96LD4 638 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 MRPL44Q9H9J2 332 aaKnown RBP15.14■□□□□ 0.01
VPS54-203ENST00000409558 LRRC4BQ9NT99 713 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 ZNF569Q5MCW4 686 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 PIGSQ96S52 555 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.14■□□□□ 0.015e-6■■■□□ 18.6
VPS54-203ENST00000409558 ATRNO75882 1429 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 XDHP47989 1333 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 CYTH3O43739 400 aa15.14■□□□□ 0.01
VPS54-203ENST00000409558 ARPP21Q9UBL0 812 aaPredicted RBP15.14■□□□□ 0.01
VPS54-203ENST00000409558 AKR1B15C9JRZ8 316 aaPredicted RBP15.13■□□□□ 0.01
VPS54-203ENST00000409558 BPIFA3Q9BQP9 254 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 ATP8A2Q9NTI2 1148 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 TBC1D7Q9P0N9 293 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 THRAP3Q9Y2W1 955 aaKnown RBP15.13■□□□□ 0.01
VPS54-203ENST00000409558 CALM1P0DP23 149 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 CALM2P0DP24 149 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 CALM3P0DP25 149 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 TAL1P17542 331 aaPredicted RBP15.13■□□□□ 0.01
VPS54-203ENST00000409558 TNNI2P48788 182 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 FXR1P51114 621 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS54-203ENST00000409558 NPY5RQ15761 445 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 KIF4BQ2VIQ3 1234 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 SOGA3Q5TF21 947 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 MTRQ99707 1265 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 IKQ13123 557 aaPredicted RBP15.13■□□□□ 0.01
VPS54-203ENST00000409558 CCDC96Q2M329 555 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 ZNF804AQ7Z570 1209 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 TICAM2Q86XR7 235 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 ANKRD7Q92527 254 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 LRP6O75581 1613 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 SMCO2A6NFE2 343 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 USP17L5A8MUK1 530 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 ASIC1P78348 528 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 CEP95Q96GE4 821 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 DRC1Q96MC2 740 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 TRIM10Q9UDY6 481 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 UBR2Q8IWV8 1755 aa15.13■□□□□ 0.01
VPS54-203ENST00000409558 RNF225M0QZC1 329 aaPredicted RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 PRCPP42785 496 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 SKIDA1Q1XH10 827 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 C12orf60Q5U649 245 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 KANK3Q6NY19 840 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 CGNQ9P2M7 1197 aaKnown RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 GUCA1BQ9UMX6 200 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 PLEKHG2Q9H7P9 1386 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 ZSCAN12O43309 604 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 CACNB1Q02641 598 aaPredicted RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 PFKFB3Q16875 520 aaPredicted RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 RAD9BQ6WBX8 426 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 ENOX1Q8TC92 643 aaKnown RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 SRRTQ9BXP5 876 aaKnown RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 ENC1O14682 589 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 SERPINB2P05120 415 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 PMS1P54277 932 aaKnown RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 SHROOM1Q2M3G4 852 aaPredicted RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 FKBP15Q5T1M5 1219 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 ERO1AQ96HE7 468 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 ZFP91Q96JP5 570 aaPredicted RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 KANSL2Q9H9L4 492 aa15.12■□□□□ 0.01
VPS54-203ENST00000409558 SEC63Q9UGP8 760 aaKnown RBP15.12■□□□□ 0.01
VPS54-203ENST00000409558 RHOXF2BP0C7M4 288 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 CDK8P49336 464 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 KRT31Q15323 416 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 UBE2SQ16763 222 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 SPTY2D1Q68D10 685 aaPredicted RBP15.11■□□□□ 0.01
VPS54-203ENST00000409558 PRR5LQ6MZQ0 368 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 REXO1L1PQ8IX06 675 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 ZNF622Q969S3 477 aaKnown RBP eCLIP15.11■□□□□ 0.013e-6■□□□□ 10.4
VPS54-203ENST00000409558 TRERF1Q96PN7 1200 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 RHOXF2Q9BQY4 288 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 CD209Q9NNX6 404 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 GGA1Q9UJY5 639 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 PCDHAC2Q9Y5I4 1007 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 SPEF2Q9C093 1822 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms