RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PIK3R5Q8WYR1 880 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 ARHGEF2Q92974 986 aaKnown RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 SERPINA10Q9UK55 444 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 SLC4A4Q9Y6R1 1079 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 RASSF7Q02833 373 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 HOOK3Q86VS8 718 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 NSMCE1Q8WV22 266 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 ARL8AQ96BM9 186 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 TMX4Q9H1E5 349 aaPredicted RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 ZBTB3Q9H5J0 574 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 RAB21Q9UL25 225 aa10.32□□□□□ -0.76
COL28A1-201ENST00000399429 G3BP2Q9UN86 482 aaKnown RBP10.32□□□□□ -0.76
COL28A1-201ENST00000399429 HMGB1P1B2RPK0 211 aaPredicted RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 RGS16O15492 202 aaPredicted RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 RASGRP2Q7LDG7 609 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 KIFC2Q96AC6 838 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 RRP36Q96EU6 259 aaKnown RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 GBP5Q96PP8 586 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 STMN4Q9H169 189 aaPredicted RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 UTP11Q9Y3A2 253 aaKnown RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 USH1CQ9Y6N9 552 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 ADCY10Q96PN6 1610 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 GPAA1O43292 621 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 FGAP02671 866 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 RPS6KA1Q15418 735 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 SEPT14Q6ZU15 432 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 CEP120Q8N960 986 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 SGSM3Q96HU1 749 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 RNPC3Q96LT9 517 aaKnown RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 ELAC2Q9BQ52 826 aaKnown RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 BICDL2A1A5D9 508 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 KIF28PB7ZC32 967 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 RPS6KA5O75582 802 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 MYBL1P10243 752 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 PSEN1P49768 467 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 SYMPKQ92797 1274 aaKnown RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 KAT2BQ92831 832 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 NHEJ1Q9H9Q4 299 aaPredicted RBP10.31□□□□□ -0.76
COL28A1-201ENST00000399429 KCND1Q9NSA2 647 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 MYOM2P54296 1465 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 UGGT1Q9NYU2 1555 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 ARHGEF40Q8TER5 1519 aa10.31□□□□□ -0.76
COL28A1-201ENST00000399429 DNM2P50570 870 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 SMTNP53814 917 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 AMPD3Q01432 767 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 PDE4DQ08499 809 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 MTMR3Q13615 1198 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 RESP18Q5W5W9 173 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 FNBP4Q8N3X1 1017 aaPredicted RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 RNF217Q8TC41 542 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 EPSTI1Q96J88 318 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 UBA5Q9GZZ9 404 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 INTS9Q9NV88 658 aaKnown RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 VPS54Q9P1Q0 977 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 A0A0U1RQJ8 604 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 MDH1P40925 334 aaKnown RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 IL15P40933 162 aaPredicted RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 ZBTB16Q05516 673 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 NR5A1Q13285 461 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 WDR93Q6P2C0 686 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 NFRKBQ6P4R8 1299 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 SLC30A9Q6PML9 568 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 TOM1L2Q6ZVM7 507 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 SMCR8Q8TEV9 937 aaPredicted RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 SMARCAL1Q9NZC9 954 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 GGT7Q9UJ14 662 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 TARSL2A2RTX5 802 aaKnown RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 PARP1P09874 1014 aaKnown RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 MAP3K12Q12852 859 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 ADAT2Q7Z6V5 191 aaKnown RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 LRRIQ1Q96JM4 1722 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 PFDN1O60925 122 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 DEXIO95424 95 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 FTCDO95954 541 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 CDC25CP30307 473 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 IFIT5Q13325 482 aaKnown RBP10.3□□□□□ -0.76
COL28A1-201ENST00000399429 SPATA4Q8NEY3 305 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 STMN2Q93045 179 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 ZIM3Q96PE6 472 aa10.3□□□□□ -0.76
COL28A1-201ENST00000399429 CFAP65Q6ZU64 1925 aaKnown RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 TTC26A0AVF1 554 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 EVI5O60447 810 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 LDHAL6AQ6ZMR3 332 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 PIK3AP1Q6ZUJ8 805 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 ZNF594Q96JF6 807 aaPredicted RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 ATP6V1G3Q96LB4 118 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 GSDMAQ96QA5 445 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 ATP8A1Q9Y2Q0 1164 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 V9GY48 417 aaPredicted RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 H7C1D1 291 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 SYF2O95926 243 aaKnown RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 TMOD1P28289 359 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 RWDD2BP57060 319 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 NR1I3Q14994 352 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 SLC9C1Q4G0N8 1177 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 STOX1Q6ZVD7 989 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 CALML4Q96GE6 196 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 KRT23Q9C075 422 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 RNF41Q9H4P4 317 aaPredicted RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 MTRF1LQ9UGC7 380 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms