RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SLC12A6Q9UHW9 1150 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 AKT3Q9Y243 479 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 KIAA0586Q9BVV6 1533 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 INO80B-WBP1J3KQ70 363 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 STAM2O75886 525 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 FMNL1O95466 1100 aaPredicted RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 DLATP10515 647 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 LMNB1P20700 586 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 RXRBP28702 533 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 CDR2Q01850 454 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 SYT10Q6XYQ8 523 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 NBPF11Q86T75 865 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 MRPL50Q8N5N7 158 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 CCDC127Q96BQ5 260 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 SCYL1Q96KG9 808 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 TTC1Q99614 292 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 HAUS8Q9BT25 410 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 INO80BQ9C086 356 aaPredicted RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 PSTPIP2Q9H939 334 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 ADD3Q9UEY8 706 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 TRPC5Q9UL62 973 aaPredicted RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 CCPG1Q9ULG6 757 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 TPCN1Q9ULQ1 816 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 RABGAP1Q9Y3P9 1069 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 BZW2Q9Y6E2 419 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 SCAF11Q99590 1463 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 MROH5Q6ZUA9 1318 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 USP17L12C9JPN9 530 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 USP17L21D6R901 530 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 TXNDC9O14530 226 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 KRT33BQ14525 404 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 RPS6KA1Q15418 735 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 KRT24Q2M2I5 525 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 FAM47AQ5JRC9 791 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 NXNQ6DKJ4 435 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 PPP4R4Q6NUP7 873 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 KLHL7Q8IXQ5 586 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 FAM178BQ8IXR5 827 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 RNF217Q8TC41 542 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 P3H4Q92791 437 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 ORAI2Q96SN7 254 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 TRIM56Q9BRZ2 755 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 MYL10Q9BUA6 226 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 PLCB1Q9NQ66 1216 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 RAB20Q9NX57 234 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 ITM2BQ9Y287 266 aa7.92□□□□□ -1.14
UPF2-203ENST00000397053 THRAP3Q9Y2W1 955 aaKnown RBP7.92□□□□□ -1.14
UPF2-203ENST00000397053 PLEKHG3A1L390 1219 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 HEXIM1O94992 359 aaKnown RBP7.91□□□□□ -1.14
UPF2-203ENST00000397053 PCK1P35558 622 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 IQCB1Q15051 598 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 RUFY4Q6ZNE9 571 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 UBN1Q9NPG3 1134 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 NLRC4Q9NPP4 1024 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 GPC4O75487 556 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 XRCC5P13010 732 aaKnown RBP7.91□□□□□ -1.14
UPF2-203ENST00000397053 ATP11AP98196 1134 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 PPP2R3AQ06190 1150 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 KRT26Q7Z3Y9 468 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 SLC7A3Q8WY07 619 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 SECISBP2LQ93073 1101 aaKnown RBP7.91□□□□□ -1.14
UPF2-203ENST00000397053 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.91□□□□□ -1.141e-6■■■■■ 44.5
UPF2-203ENST00000397053 ARPP21Q9UBL0 812 aaPredicted RBP7.91□□□□□ -1.14
UPF2-203ENST00000397053 MAP3K19Q56UN5 1328 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 hCG_1642624A0A1W2PR95 340 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 CLGNO14967 610 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 NFKBIAP25963 317 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 PPP2R5AQ15172 486 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 AOC3Q16853 763 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 CYP26C1Q6V0L0 522 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 PLA2G4DQ86XP0 818 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 RETREG2Q8NC44 543 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 KLHDC4Q8TBB5 520 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 TBC1D32Q96NH3 1257 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 KRT12Q99456 494 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 MOSPD1Q9UJG1 213 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 PCDHA12Q9UN75 941 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 TBX22Q9Y458 520 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 SYNRGQ9UMZ2 1314 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 KDM3AQ9Y4C1 1321 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 FANCAO15360 1455 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 K7ENM7 598 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 CTDSPL2Q05D32 466 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 SFMBT2Q5VUG0 894 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 GPBP1Q86WP2 473 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 MAP7D3Q8IWC1 876 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 IFT20Q8IY31 132 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 DISC1Q9NRI5 854 aa7.91□□□□□ -1.14
UPF2-203ENST00000397053 A6NJR5 290 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 TMEM232C9JQI7 657 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 M0R2C6 588 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 CUTAO60888 179 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 SLC4A1P02730 911 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 STMN1P16949 149 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 EPHB1P54762 984 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 NOP14P78316 857 aaKnown RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 HS1BP3Q53T59 392 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 ARMCX5Q6P1M9 558 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 MLKLQ8NB16 471 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms