RNA–Protein interactions for RNA: ENST00000396548.5

TRIM39-204, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TRIM39, Length 3,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-204ENST00000396548 DCAF4Q8WV16 495 aa14.7□□□□□ -0.06
TRIM39-204ENST00000396548 FOXP1Q9H334 677 aaPredicted RBP14.7□□□□□ -0.06
TRIM39-204ENST00000396548 CPVLQ9H3G5 476 aa14.7□□□□□ -0.06
TRIM39-204ENST00000396548 VPS54Q9P1Q0 977 aa14.7□□□□□ -0.06
TRIM39-204ENST00000396548 KLHL40Q2TBA0 621 aa14.7□□□□□ -0.06
TRIM39-204ENST00000396548 SKOR2Q2VWA4 1001 aaPredicted RBP14.7□□□□□ -0.06
TRIM39-204ENST00000396548 NBPF12Q5TAG4 269 aaPredicted RBP14.7□□□□□ -0.06
TRIM39-204ENST00000396548 FRMPD2Q68DX3 1309 aaPredicted RBP14.7□□□□□ -0.06
TRIM39-204ENST00000396548 ADAMTS3O15072 1205 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 MYSM1Q5VVJ2 828 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 TYW1BQ6NUM6 668 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 OXER1Q8TDS5 423 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 LEO1Q8WVC0 666 aaPredicted RBP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 CABP5Q9NP86 173 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 GGA3Q9NZ52 723 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 RCOR1Q9UKL0 485 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 TMX2Q9Y320 296 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 M0R2N6 131 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 GRIN3BO60391 1043 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 KIAA1755Q5JYT7 1200 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 FAM177A1Q8N128 213 aaPredicted RBP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 USP28Q96RU2 1077 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 TFIP11Q9UBB9 837 aaKnown RBP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 OTOFQ9HC10 1997 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 BTBD18B2RXH4 712 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 STXBP3O00186 592 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 AKAP17AQ02040 695 aaKnown RBP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 TRIM29Q14134 588 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 GPATCH4Q5T3I0 446 aaKnown RBP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 WWC2Q6AWC2 1192 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 FTOQ9C0B1 505 aaKnown RBP eCLIP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 SCAND2PQ9GZW5 306 aaPredicted RBP14.69□□□□□ -0.06
TRIM39-204ENST00000396548 RTEL1Q9NZ71 1219 aa14.69□□□□□ -0.06
TRIM39-204ENST00000396548 GPR162Q16538 588 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 TTBK2Q6IQ55 1244 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 DIS3L2Q8IYB7 885 aaKnown RBP14.68□□□□□ -0.06
TRIM39-204ENST00000396548 GINM1Q9NU53 330 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 BARHL2Q9NY43 387 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 MTMR7Q9Y216 660 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 POTECB2RU33 542 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 F5H6K3 240 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 FIBPO43427 364 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 ECE1P42892 770 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 KLRC3Q07444 240 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 NOSTRINQ8IVI9 506 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 ACER1Q8TDN7 264 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 UBA5Q9GZZ9 404 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 JMJD4Q9H9V9 463 aa14.68□□□□□ -0.06
TRIM39-204ENST00000396548 NASPP49321 788 aaPredicted RBP14.67□□□□□ -0.06
TRIM39-204ENST00000396548 TOB1P50616 345 aaPredicted RBP14.67□□□□□ -0.06
TRIM39-204ENST00000396548 SLFN13Q68D06 897 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 POLR3EQ9NVU0 708 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 CFAP45Q9UL16 551 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 PARP14Q460N5 1801 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 GLTPD2A6NH11 291 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 CTNND1O60716 968 aaKnown RBP14.67□□□□□ -0.06
TRIM39-204ENST00000396548 NDUFB10O96000 172 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 NR5A1Q13285 461 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 ADGRF4Q8IZF3 695 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 EARS2Q5JPH6 523 aaKnown RBP14.67□□□□□ -0.06
TRIM39-204ENST00000396548 BTNL9Q6UXG8 535 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 KCTD1Q719H9 257 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 DAGLBQ8NCG7 672 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 ZNF396Q96N95 335 aaPredicted RBP14.67□□□□□ -0.06
TRIM39-204ENST00000396548 PIGSQ96S52 555 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 CLIC4Q9Y696 253 aa14.67□□□□□ -0.06
TRIM39-204ENST00000396548 PPP1R11O60927 126 aaPredicted RBP14.66□□□□□ -0.06
TRIM39-204ENST00000396548 ASNSP08243 561 aa14.66□□□□□ -0.06
TRIM39-204ENST00000396548 LMOD1P29536 600 aaPredicted RBP14.66□□□□□ -0.06
TRIM39-204ENST00000396548 UBE2HP62256 183 aa14.66□□□□□ -0.06
TRIM39-204ENST00000396548 ATP2B2Q01814 1243 aa14.66□□□□□ -0.06
TRIM39-204ENST00000396548 GPKOWQ92917 476 aaPredicted RBP eCLIP14.66□□□□□ -0.06
TRIM39-204ENST00000396548 PGBD1Q96JS3 809 aa14.66□□□□□ -0.06
TRIM39-204ENST00000396548 GPCPD1Q9NPB8 672 aa14.66□□□□□ -0.06
TRIM39-204ENST00000396548 XBP1P17861 261 aa14.66□□□□□ -0.06
TRIM39-204ENST00000396548 RRP36Q96EU6 259 aaKnown RBP14.66□□□□□ -0.06
TRIM39-204ENST00000396548 GLIS2Q9BZE0 524 aaPredicted RBP14.66□□□□□ -0.06
TRIM39-204ENST00000396548 SOCS7O14512 581 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 NCLP19338 710 aaKnown RBP14.65□□□□□ -0.06
TRIM39-204ENST00000396548 PTPAQ15257 358 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 CSPP1Q1MSJ5 1256 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 PRAMEF18Q5VWM3 479 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 USP50Q70EL3 339 aaPredicted RBP14.65□□□□□ -0.06
TRIM39-204ENST00000396548 LINC00301Q8NCQ3 95 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 SPATA32Q96LK8 384 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 ARHGEF10LQ9HCE6 1279 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 KRT2P35908 639 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 DPY19L2Q6NUT2 758 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 PIBF1Q8WXW3 757 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 ZNF341Q9BYN7 854 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 ZMYND12Q9H0C1 365 aa14.65□□□□□ -0.06
TRIM39-204ENST00000396548 DDX49Q9Y6V7 483 aaKnown RBP14.65□□□□□ -0.06
TRIM39-204ENST00000396548 hCG_1984214I3L0E3 225 aa14.64□□□□□ -0.07
TRIM39-204ENST00000396548 SLC1A4P43007 532 aa14.64□□□□□ -0.07
TRIM39-204ENST00000396548 NOM1Q5C9Z4 860 aaKnown RBP14.64□□□□□ -0.07
TRIM39-204ENST00000396548 DCAF15Q66K64 600 aa14.64□□□□□ -0.07
TRIM39-204ENST00000396548 ZNF713Q8N859 430 aaPredicted RBP14.64□□□□□ -0.07
TRIM39-204ENST00000396548 HOOK2Q96ED9 719 aa14.64□□□□□ -0.07
TRIM39-204ENST00000396548 PCDHA4Q9UN74 947 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms